LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g3233	ATGGAAGCCTTTGTATCCGAAGCGTGGAAGCCTATTCAGCCTTCAAATTTTGCAATCGTCAACGATCGGATCAACTCTGACGTCTGTATCAATGATTATTTGCTACCTCAAGACGAAAAGCCCATCAATACTGATCAACTTTGGTTCAATGGTACTAAAATCATCTCCAGAATTGAAAGACCTGAGTTCGAATTTCAATCCATGTCAAAATTAACCAAACAGGAGCCAATCAGTAATAATGATGTATCGTTTCATAGTTCGAACCAACCAGAAACATATTCTTGTGCCGAGTTTAGCAGGAGAGAAGTGGCTAGAACCGATTGCTCTAAGCCTCCGAAATCGTCGAATTTGAGCAATCGGAAGCCATCGATAAACATTGAAATTCCTCAGATGAGCTTGAAGATTAGTAACTCACAGGCTAAGCAAATCGCAGAGGAGAAGCACTATCGAGGAGTGAGGAGGCGACCGTGGGGAAAATTCGCGGCTGAGATTCGAGATCCGAATAGAAAAGGTTCGAGAGTGTGGCTAGGAACCTTCGATACAGCAGTGGAAGCTGCAAGAGCATATGACAGAGCGGCTTTCAAGCTGAGAGGAAGCAAAGCTATACTGAACTTCCCGCTTGAGGTTGGGGAATTTTCTCGAGAATCTGGAGAATCAGAATGCACAGAAGCGAAGGCTGTGGGCGAGAAAAGGAGAAGAGAAGGAGAGGACGAAGAAGAGATGGAGAAGAAGAAGGAGTTGAAGAAGGAAGAGATAATCTCACCCAAAGGGGTTGGTCCACTGACGCCGTCATGTTGGAAGGGGTTTTGGGACACTGATGTTGCCAACACAATTTTCAGCGTTCCTCCGTTATCGCCGTTATCTCCGCTAATGGTTGTGTGA	882	0.4524	MEAFVSEAWKPIQPSNFAIVNDRINSDVCINDYLLPQDEKPINTDQLWFNGTKIISRIERPEFEFQSMSKLTKQEPISNNDVSFHSSNQPETYSCAEFSRREVARTDCSKPPKSSNLSNRKPSINIEIPQMSLKISNSQAKQIAEEKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAVEAARAYDRAAFKLRGSKAILNFPLEVGEFSRESGESECTEAKAVGEKRRREGEDEEEMEKKKELKKEEIISPKGVGPLTPSCWKGFWDTDVANTIFSVPPLSPLSPLMVV	293

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g3233	293	PANTHER	DNA-BINDING DOMAIN	99	241	IPR044808	GO:0003700\|GO:0009873
	Bisa01g3233	293	SUPERFAMILY	DNA-binding domain	148	208	IPR016177	GO:0003677
	Bisa01g3233	293	Gene3D	AP2/ERF domain	147	208	IPR036955	GO:0003700\|GO:0006355
	Bisa01g3233	293	PRINTS	Ethylene responsive element binding protein signature	172	188	IPR001471	GO:0003700\|GO:0006355
	Bisa01g3233	293	PRINTS	Ethylene responsive element binding protein signature	149	160	IPR001471	GO:0003700\|GO:0006355
	Bisa01g3233	293	FunFam	Ethylene-responsive transcription factor 2	147	208	-	-
	Bisa01g3233	293	CDD	AP2	147	206	IPR001471	GO:0003700\|GO:0006355
	Bisa01g3233	293	MobiDBLite	consensus disorder prediction	227	248	-	-
	Bisa01g3233	293	ProSiteProfiles	AP2/ERF domain profile.	148	206	IPR001471	GO:0003700\|GO:0006355
	Bisa01g3233	293	SMART	rav1_2	148	212	IPR001471	GO:0003700\|GO:0006355
	Bisa01g3233	293	Pfam	AP2 domain	148	198	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g3233	Bisa-ChrBisa01	74045076	74045957	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g3233	114	290	AP2-EREBP Transcription Factor Family	AT5G51190	53.333	1.04e-55	177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa01g3233		AP2	1e-15	CL0081