Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3201 ATGGGTGACCCGTACCCGTATGGGGTCCCCGTACCCGATTTCCAGCAGCTCATAGGAGGAAGAACCCATTTACACTCCGCCGACCCGAGCGATCTCCCGGAGCCGCCACTACCGTTGTTGAGTGCTGCTCCTCCTCCCCCCAACAGCTACGACGTTGTCTTCTCTCACGGGTTCACTCATCACTTTGCTGCTCATCATCATGACTATTCCTCCTCAAGTGTTAGTAATCCCATCGCAAACCCTACTGTTACGGCTTCAGTAGATCATGCCACTAGCATAGACGAAAAGGGGTGGCTTGGATTTGACGCTACTGCTAACAACCGCTGGCCTAGACAAGAGACTCTCTCCCTCTTAGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGACACCAATCACAAAGGCCCATTGTGGAACGAGATTTCTAGATATTCCACTGATCCCTTGATCATGGAGGAGGAATATGGGTACCAAAGAAGTGGGAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGGAAAGCAGGAAGACAAGATGGGAAGCACTACAGATTCTTCCGCCAGCTTGAAGCAATATGTGGAGAAGCAAGCACCACTTCTCATGCCTCAACTAATTCAGAAACCACACACCACCATCATCATCATCATGCTTTGTTAAACACTACGATTACTCCTACTACAAGTTCTCCTTATGATAGTGAAGTTCTTCATCATCATCATCATCATCTTCCCAACCTCAAGTGCTCAAAAAGCCTTAGCCTCTCAAACAATAACTCGTCTGAGTTCGAGACATCCTCGTCCGAGAACAACAACGACGAGGATCTCTCAGCCATTGCCTATATGATGAAGCAGAAAGGTTCAGACGAGAAGAGACAAAGTGGAGGGAGGGTGAGGAGAAGCCGGAGAGCGAAGGTTGAGGAGATTGTGGACTCACACATGAGGAAGATAATAGAGACTCAAGACGCTTGGATGAAGAAGATGATGCGTGTGGTGGAGCAAAGAGAGCAAGAGATGGCATCCAAGGAGGAAGAAAGGAAGAGGAACGATTGCATGAGGATTGATCGAAAAGTACACGAGCTCTGGGCTAAAGAGAGAGCTCGGATTGAAGCAAAAGACGCTGCACTAATGGAGGCAGTGAAAAGGCATTTGGGAAAAGAAATATCTATATCACTCGAAGCAGTGCCATTAACTACTAATGAAGTACCACAAAACAAGAATAATAGCAACAACGGTGCGTGGACAGAACTGGAGATCTCAAATCTGATACAGCTGAGGAGTGGGTTTGAAGTGAGGCTCCAGGAAAGTGGTATCAATGGAGGGTACTTAGTGGAGGAGAATAACGGTGTTTGGGATGAAATAGCAGCGAGAATGGGGTGTTTGGGGTTTGAGAGGAATGCGAGTGAGTGCAAGCAAATATGGGGTGAGATCAGCTTGTCTTTGAACAAAACAAGACCTTTCGCCGTAGGACTTCAGCTGACGGAGGATGACATTTCACACTCGAGTACTAACGCAGGCACCAGAGGTAATTATCTGACAGCTACTCCAGAGTTCTAA 1578 0.4689 MGDPYPYGVPVPDFQQLIGGRTHLHSADPSDLPEPPLPLLSAAPPPPNSYDVVFSHGFTHHFAAHHHDYSSSSVSNPIANPTVTASVDHATSIDEKGWLGFDATANNRWPRQETLSLLEIRSRLDSKFRDTNHKGPLWNEISRYSTDPLIMEEEYGYQRSGKKCKEKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEAICGEASTTSHASTNSETTHHHHHHHALLNTTITPTTSSPYDSEVLHHHHHHLPNLKCSKSLSLSNNNSSEFETSSSENNNDEDLSAIAYMMKQKGSDEKRQSGGRVRRSRRAKVEEIVDSHMRKIIETQDAWMKKMMRVVEQREQEMASKEEERKRNDCMRIDRKVHELWAKERARIEAKDAALMEAVKRHLGKEISISLEAVPLTTNEVPQNKNNSNNGAWTELEISNLIQLRSGFEVRLQESGINGGYLVEENNGVWDEIAARMGCLGFERNASECKQIWGEISLSLNKTRPFAVGLQLTEDDISHSSTNAGTRGNYLTATPEF 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3201 525 ProSiteProfiles Myb-like domain profile. 413 485 IPR001005 -
Bisa01g3201 525 SMART sant 417 487 IPR001005 -
Bisa01g3201 525 SMART sant 105 174 IPR001005 -
Bisa01g3201 525 ProSiteProfiles Myb-like domain profile. 107 172 IPR001005 -
Bisa01g3201 525 MobiDBLite consensus disorder prediction 23 44 - -
Bisa01g3201 525 FunFam Trihelix transcription factor GT-2 109 177 - -
Bisa01g3201 525 Coils Coil 332 352 - -
Bisa01g3201 525 Gene3D - 421 490 - -
Bisa01g3201 525 Gene3D - 109 177 - -
Bisa01g3201 525 PANTHER FI21293P1 79 491 - -
Bisa01g3201 525 MobiDBLite consensus disorder prediction 256 280 - -
Bisa01g3201 525 CDD GT1 107 179 - -
Bisa01g3201 525 MobiDBLite consensus disorder prediction 205 224 - -
Bisa01g3201 525 Pfam Myb/SANT-like DNA-binding domain 107 200 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3201 Bisa-ChrBisa01 73118009 73120274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3201 108 492 Trihelix Transcription Factor Family AT5G03680 42.961 3.25e-88 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Bisa01g3201 Myb_DNA-bind_4 4.7e-17 CL0123