Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3198 ATGGATGTCGTAGAAGAAGAGCGGCAGAGCAAGGAGGCAAGGTTTGCACCTCGACAAGTAAATGGACAACAGTTACCTAGTTTAGTTCGAAGAAGAAGGATCAGAATTCAGAAGCGAAGAGGAGAAGCTCGAAACGGTGAGTTCAACCTGCTGCTTTGGGCAGCAGAGTTTGCTTCCCACTCGATCACATTCCAGAAGGCTGCTTCGCTATTCGACGGAGATAACGGTTGTGCTACACCGTTCATCGCTGGCGAAGTAACTCTTGTCTTGCATTATGTCCTTGGTTTCTCTGTACAACATGAAAGTGACATTGTGGTGCTGAAACAAAGTGTTGGTCAACATATCATGCCAGAAGGAAGAAGGAAAAATAAGAAGAACAAAGAACTTTCTATTCCTCGTCCTGCATGTTCATGGGTGTATTTCAGTAAGGAGTTTGTCAAAGAGTACATTACTTCTCATCCTGAGTCCTCTGGCCTTAAATCTGCAACCAAAGCTGCATCAGATGCTTGGAAATCAATGAGCCCTGAAGAGAAGGAAAAATACACCAGGCATGCACATGAGGTGTGGGATGGCTACTTGAATGCAAGCCCTGTCCATGTCTCCAAGCCAAGAAAACAGACGAAGTTGGTTACAAGATGCTCTCCCGGCCGCTTATTCAATTTGTTGCAGCGCCTCACACCTGAACAAAAGGATGCAGTTAAGAGCATGGGATTTGGCAGCCTCCTTGGCCTTAGATGTCAAATGCTTCGGCGCAGTTTGTGCCTTTGGCTATTGGAGAGGTTTAACACCACAAACAGAAGCTTGGAGATCCGTAATGAGTGCATCCCTTTAACTCCAAAAGATGTAGAAATAGTAATGGGATTATCATCTAGTGGAAAGGATGTGGTGAACTCAGGTCCAGATGACTTAATTTCAGACTTACGAAACAGTTACAATGCTACAAACCATGGAATTTCAGTGCGACTTCTAAAGGAGCGGTTGGCAGGTCCAGAAGCTGGAGAGGATTTCAGAAGATCCTTTGTTCTCTATGCACTGGGAACTTTTTTGTCCCCTACAGCTAGGCTGGATGTTAGCCCTTCTTTCCTTCACTTTCTGACAAATATGAATCTGGTCCATCAGTACAACTGGGGTAAATTCTTGCTTGATAGGCTGGTTCGAGAGGTATCGCGCTTCTGTCAAGGGAAGCAACAGGCTGTTGGTGGTTGTCTCCTGTTTCTCCAGCTATTCTACTATGAGATCATCTCTCTTGAGGAATCTTCTGCTTTAGCTCCAACAGTTGTTCCATGCCTGTTTAACTGGGGAGAGGAGGAAATTACTGAGAGAGAAAAACGAGAAAAAGAACTTGGGGGCTATGGTTTTGGAGAGGTAACATATAAGGAGAAGTGCCATCAGATGGAGTCAGAGTACATAGATCGCCTTGATGGTCCACCAGTTAGTGCACCAAGCACTAGGATTGAGTACGGTCCTGTGCTTGAACAGGATTTCAACCAGGATGACATCTCGGATTTCCTCAAGAATAAATCGGTCATCTGTGATGTCGAGGTAGTGGTTGAATCCGTGAAAGCCCCGTGCCGGAACAGAGAATATGGTTGCAATGAAACTCTGGACTACATGGCCTGTGATGACCATGAAGCAACATGCAGTTATGCTCCATGTGCTTGCCCTCTTCAAAGCTGCAGCTATGTTGGGTCATCTGAACAGTTGGCGCTACACTTCAGCAGCAAACATTGGGATTCCGGAAGGCGATTCAAATATAACTGTGCATTGGATGTTTCGTTGCAGATGGATGAACAATTCCTTGTTCTCCAAGCGGAAGAAGATGGTGTTCTCTTTCTTCTCAACAAGGGCAAGAAACTAATGGGAGAAGAGTGA 1872 0.4541 MDVVEEERQSKEARFAPRQVNGQQLPSLVRRRRIRIQKRRGEARNGEFNLLLWAAEFASHSITFQKAASLFDGDNGCATPFIAGEVTLVLHYVLGFSVQHESDIVVLKQSVGQHIMPEGRRKNKKNKELSIPRPACSWVYFSKEFVKEYITSHPESSGLKSATKAASDAWKSMSPEEKEKYTRHAHEVWDGYLNASPVHVSKPRKQTKLVTRCSPGRLFNLLQRLTPEQKDAVKSMGFGSLLGLRCQMLRRSLCLWLLERFNTTNRSLEIRNECIPLTPKDVEIVMGLSSSGKDVVNSGPDDLISDLRNSYNATNHGISVRLLKERLAGPEAGEDFRRSFVLYALGTFLSPTARLDVSPSFLHFLTNMNLVHQYNWGKFLLDRLVREVSRFCQGKQQAVGGCLLFLQLFYYEIISLEESSALAPTVVPCLFNWGEEEITEREKREKELGGYGFGEVTYKEKCHQMESEYIDRLDGPPVSAPSTRIEYGPVLEQDFNQDDISDFLKNKSVICDVEVVVESVKAPCRNREYGCNETLDYMACDDHEATCSYAPCACPLQSCSYVGSSEQLALHFSSKHWDSGRRFKYNCALDVSLQMDEQFLVLQAEEDGVLFLLNKGKKLMGEE 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3198 623 SUPERFAMILY TRAF domain-like 519 615 - -
Bisa01g3198 623 CDD HMG-box_SF 133 192 - -
Bisa01g3198 623 SMART hmgende2 130 201 IPR009071 -
Bisa01g3198 623 Pfam Seven in absentia protein family 513 591 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bisa01g3198 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 515 572 IPR013083 -
Bisa01g3198 623 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 131 200 IPR009071 -
Bisa01g3198 623 Gene3D High mobility group box domain 117 198 IPR036910 -
Bisa01g3198 623 SUPERFAMILY HMG-box 117 194 IPR036910 -
Bisa01g3198 623 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 181 621 IPR044286 -
Bisa01g3198 623 Pfam HMG (high mobility group) box 131 195 IPR009071 -
Bisa01g3198 623 Pfam Plant mobile domain 252 415 IPR019557 -
Bisa01g3198 623 ProSiteProfiles Zinc finger SIAH-type profile. 519 577 IPR013010 GO:0008270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bisa01g3198 Sina 1.4e-13 CL0389