Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3165 ATGACAGATATTCAACCGCTACAACAGAAGCCTGAACCTGCTACTGATGCCCATGCTGAGTTTGAGCGTGGACTGGAGGACTATATGCGGGGCCACTTGGATGATTGCATGTCATTTGCTTCATGTAGCTCTACTCGGACTCCAGAGGGTGAGGATGATGAGGGTGATCAGCTAGTCAGGAGGAGACGAAGATCTGATCTTGAAGGGGATGATTTGGCAGAATCATCAGCTGCACGCCGGCGCCACTCGCGGATTTTGAGCAGATGGGCTGCTCACCAGGCACAAGAGATGATAACTACAATTGAGAGGAGGAATCGGGAGTCTGAGTTAATGGCACTTGCTGGACTCCACACAGTCTCAATGTTGGATTCTTCCTTTCTGAGGGGATCGCAGCCTCCAACTTCTGGCCAGGAGGGGGCTGCAGAGAGGCCCAGCACTCAGGCATCTGCAATTCTACAGATGTGGCGTGAACTGGAGGATGAGCACTTATTGAATAGGGCACGTGAAAGAATGAGGGAAAGGTATCGACAACGAAGGAGTGCTGAGTCTAATGCTAATGAATCAAGTACCATGTCAGATAGTCGAGGTAGTGAGAATCAGGGGAGTTTGGTGGATGCAAGTGAAAGTGAAAATGATTATGGGACTTGGTCACATGATCAGATTCAATCACAGCATGAAAATGGGGATCATAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGTGAAGTTGAGAGGGAGAGAGTTAGACAAATCGTTCGAGGATGGATGGAAAGTGGCATAAGTGATCATTCATCTAATTCAAGTCAGAGAAACAATAATCACAGAGCTGAATGGCTTGGTGAAACAGAACGTGAAAGGGTAAGAATTGTCAGGGAGTGGGTACAAATGACAAGTCAGCAGAGAGGTTCTCGTGGGAGCCGGAGGGATAGTCAAGTCACTGAAAGCGGTGCTCCAGTTAGTCGAGTACGTGATGGATTGATGACTGATCATGATGAGGGCCAGCGAGAGCATGTTCGTCGAGACTTGTTGAGGTTGCGTGGAAGACAAGCTTTGGTTGATTTGCTTGTGAGGGTAGAAAGGGAAAGACAAAGAGAGCTGCAGGGTTTGTTGGAGCACCGGGCAGTTTCTGATTTTGCTCATCGCAACCGCATCCAGTCATTGCTCAGAGGTAGATTCCTCCGAAATGAAAGACCTGTAGAAGATGAGAGGCCACCTTCTATAGCTGCGAATGAATTAGTTCAGTTAAGACAACGGCACACAGTCTCTGGTTTAAGAGAAGGGTTTCGTTCAAGATTAGAAAATATTGTTCGCGGTCAGGCCAGCAGCAATTCTGATGCCACATCTAATAACATCAGTGAAACTAGAAGTGACCTGAACCAAGCAAACAATTCAATAGATGCCCAGCAAGAAAATTATGAACCAGGGCAGATTAGGAGCCTGGAAGCTGATGTGCAGCATTTGGCTGATCAAACAGGAACTTTTGAAAGTACCACTAGTGAGAGTGTAAGTTGGCAAGAAACTGGTAATCAAGGAGAGAACTGGCAGGAACAAGTTGCAGAAGATGATCATGGGAATTGGCAACGGAGAGCTTATGGTCCATTCAATCAGTTAAGAGATGGAAGTGCAGTTAGCACTTGGCCTCAGGATACTCCAAGAAATGTAGAAGGGGAGGACACTCATCCACAAGAAACTCAGGGAATTTGGCGTGAGGAAAATTCAAGGGAAGCTGCTGGTAATTGGTCTGAAGAACCTTCTGGTCCTCCAAGGAATCGACGAGGTGTTCCTTTTAGGAGATTCAACAGATTTCATCCACCTGATGATGATAATGTATATAGCATGGAGCTTAGAGAACTTCTGAGCCGGAGAAGTGTTTCTAATCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGCCGTGCTCCAATTGACTGGGAGCCAACCCCTGCCTCACCTGATAGGGATCCTGAACAACAGGCAGATGAACGCACTGGGGTTCAACATGATGCCATTAATAGGCCTTCGCTAGTGTTGCCATCTCCCCCAGTGCCTCCACCACAACCACTTTGGCATCAGGACTTGCATCAGACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAATGGGAGATAATTAATGATTTGAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCTTGCATGGATATGCAACTGGAGTTACAGCGCTCTGTCAGACAGGAAGTCTCTGCAGCGCTGAATCGGTCAGCTGGTGAAAATGGATTGGGTGTTGAGACATCCGAGGATGGTTCTAAATGGGGTCATGTGAAGAAAGGAACTTGCTGTGTATGTTGTGATAGCCATATTGATTCGCTCTTGTACAGATGTGGTCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAGTTCGTGGTGGAGGGAAGTGCCCTTTATGCCGAGCACCTATTGTTGAGGTGATCCGAGCATATTCCATTATGTAA 2544 0.4701 MTDIQPLQQKPEPATDAHAEFERGLEDYMRGHLDDCMSFASCSSTRTPEGEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAAHQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQPPTSGQEGAAERPSTQASAILQMWRELEDEHLLNRARERMRERYRQRRSAESNANESSTMSDSRGSENQGSLVDASESENDYGTWSHDQIQSQHENGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNSSQRNNNHRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQVTESGAPVSRVRDGLMTDHDEGQREHVRRDLLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPVEDERPPSIAANELVQLRQRHTVSGLREGFRSRLENIVRGQASSNSDATSNNISETRSDLNQANNSIDAQQENYEPGQIRSLEADVQHLADQTGTFESTTSESVSWQETGNQGENWQEQVAEDDHGNWQRRAYGPFNQLRDGSAVSTWPQDTPRNVEGEDTHPQETQGIWREENSREAAGNWSEEPSGPPRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWEPTPASPDRDPEQQADERTGVQHDAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIINDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGVETSEDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIM 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3165 847 MobiDBLite consensus disorder prediction 258 279 - -
Bisa01g3165 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 783 845 IPR013083 -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 47 79 - -
Bisa01g3165 847 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 111 847 - -
Bisa01g3165 847 Pfam Zinc finger, C3HC4 type (RING finger) 792 839 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 436 463 - -
Bisa01g3165 847 ProSiteProfiles Zinc finger RING-type profile. 795 834 IPR001841 -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 539 553 - -
Bisa01g3165 847 Coils Coil 724 744 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 493 604 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 648 675 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 172 245 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 40 79 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 260 276 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 125 147 - -
Bisa01g3165 847 Coils Coil 164 184 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 493 516 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 297 318 - -
Bisa01g3165 847 Coils Coil 452 472 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 554 571 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 182 222 - -
Bisa01g3165 847 CDD mRING-HC-C3HC5_NEU1 792 844 - -
Bisa01g3165 847 MobiDBLite consensus disorder prediction 297 337 - -
Bisa01g3165 847 SUPERFAMILY RING/U-box 794 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3165 Bisa-ChrBisa01 71740887 71746150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3165 795 841 C3H Transcription Factor Family AT3G06140 42.553 1.10e-06 49.7