Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3157 ATGGAAGCTGTAGAGGAACAAGTCGCCTTGGGGTCTAAAGAGCAAATTCACATCATCAAAGGGAAGAGAACCAAAAGGATAAGGCCACAATCTCCAATTCCCTTCACAGTCACTGCAAATTCTTCAAATGGAGAAGGGGACACAGGAGATCATATTCATACCCCCATTGACGACGACGGCGAAGCCACCATTAATAACAACACTTGTTCTGCTGAATTACAGGGCAGCACAGAGGAAGAGGAAGACATGGCCAACTGCCTCATTCTTTTAGCTCAAGGACAATCCTGGGAGTCCCAGAAGCCGCTGGCCGAGGAAGATAATGATAATAATGTTTTGAATTACAGCAAGTATAGCAGCAGAAAATTCATGGAAGCAGCAACAATGGGGTACGAATGCAAGACTTGTAACAGAACATTTCCTTCGTTTCAAGCATTGGGAGGCCACAGAGCAAGCCACAAGAAGCCTAAGGCTTTAGCTTTTGCAATAATGGCGTTTGATGATGAAGAGTTTCAAGTGAAGAACAAGAACAACCCATTTTCTCCTCAATTAAATAATAATAATGGAAGAGGGATCAATCTGTGCAAGAGCAAGTCGAGGGTTCACGAGTGCTCTGTTTGTGGTGCGGAATTCACGTCGGGACAAGCTCTGGGTGGCCACATGAGACGACATCGAGCGCCGGTCGGAAATAACACGAATACGACGTTGTCGTTGACGCCAATGGCTGCTCTGGAATTACCGGACGAGGATGAGCCGAAACGGCGAAGGAAAACACTGTCGTTGGACTTGGATCTGAATCTTCCAGCGCCAGAAGATGATCAAAGAGAACCCAATTCCAAGTTTCCCTTTGCGTCCAAGCAGCGACAACAAAAACAACAACAGGAAGCAAGCCTTGTCTTCTCTGCTACTTCTTTGGTGGATTGTCGTCACTGA 930 0.4634 MEAVEEQVALGSKEQIHIIKGKRTKRIRPQSPIPFTVTANSSNGEGDTGDHIHTPIDDDGEATINNNTCSAELQGSTEEEEDMANCLILLAQGQSWESQKPLAEEDNDNNVLNYSKYSSRKFMEAATMGYECKTCNRTFPSFQALGGHRASHKKPKALAFAIMAFDDEEFQVKNKNNPFSPQLNNNNGRGINLCKSKSRVHECSVCGAEFTSGQALGGHMRRHRAPVGNNTNTTLSLTPMAALELPDEDEPKRRRKTLSLDLDLNLPAPEDDQREPNSKFPFASKQRQQKQQQEASLVFSATSLVDCRH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3157 309 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Bisa01g3157 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 223 IPR013087 -
Bisa01g3157 309 SUPERFAMILY beta-beta-alpha zinc fingers 130 223 IPR036236 -
Bisa01g3157 309 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
Bisa01g3157 309 MobiDBLite consensus disorder prediction 279 296 - -
Bisa01g3157 309 Pfam C2H2-type zinc finger 130 155 - -
Bisa01g3157 309 Pfam C2H2-type zinc finger 200 226 - -
Bisa01g3157 309 SMART c2h2final6 201 223 IPR013087 -
Bisa01g3157 309 SMART c2h2final6 130 152 IPR013087 -
Bisa01g3157 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 157 IPR013087 -
Bisa01g3157 309 MobiDBLite consensus disorder prediction 217 296 - -
Bisa01g3157 309 MobiDBLite consensus disorder prediction 245 260 - -
Bisa01g3157 309 Gene3D Classic Zinc Finger 128 223 - -
Bisa01g3157 309 PANTHER ZINC FINGER PROTEIN ZAT5 68 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3157 Bisa-ChrBisa01 71249891 71250820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3157 1 309 C2H2 Transcription Factor Family AT5G04390 41.867 2.70e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa01g3157 zf-C2H2_6 3.8e-13 CL0361