Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa01g3099 | ATGCCCTTAGCTCAAGATCCATTCTACGTTGTGAAGGAAGAGATTCAAGAATCTATTGATAAGTTGCAATCTACTTATCACCAATGGCAAAGCACTCCTCCTGATGCTGCGGAGCGAGTGAATCTTTCAAAGGAGCTGCTTGCTAGTTGCGGGAGCATTGAGTGGCAGGTAGATGAATTGGACAAAGCAATTGCTGTGGCAGCTAGAGATCCGTCTTGGTATGGCATAGATGAAACAGAGCTTGAAAATCGGAGGAGATGGGCAAACAGTGCTCGTACCCAGGTTGCCACAGTAAAGAAAGCAGTGGAGGCCGGAAAGGGATCAACTATGGCAAGTCGTGATAGTGTAGCAATGCGGCGAGAACTAATGAGGCTTCCTAATTCCCATCAAGTTGATAAATCCAACCAATATGCTGCCCAAGACAATGAGGATTTCATATCATCAGAATCAGATAGACAGCTGCTTCTTGTAAAGCAACAGGATAAGGAGTTGGATGAGCTTAGTGCAAGTGTACAAAGAATTGGAGGTGTTGGGCTCACAATACATGAAGAACTCCTTGGACAGGAAAAGATTATAGATGAATTGGGTGCTGAAATGGACAATACATCAAATCGACTAGATTTTGTCCAGAAAAAAGTAGCAATGGTCATGAAGAAGGCTGGTGTGAAGGGCCAGATCATGATGATATTGGCTTTGGTGGTTCTGTTCATTTTCCTTTTTATTTTGGTATTCTTCACCTAG | 741 | 0.4332 | MPLAQDPFYVVKEEIQESIDKLQSTYHQWQSTPPDAAERVNLSKELLASCGSIEWQVDELDKAIAVAARDPSWYGIDETELENRRRWANSARTQVATVKKAVEAGKGSTMASRDSVAMRRELMRLPNSHQVDKSNQYAAQDNEDFISSESDRQLLLVKQQDKELDELSASVQRIGGVGLTIHEELLGQEKIIDELGAEMDNTSNRLDFVQKKVAMVMKKAGVKGQIMMILALVVLFIFLFILVFFT | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa01g3099 | 246 | SMART | tSNARE_6 | 149 | 216 | IPR000727 | - | |
| Bisa01g3099 | 246 | FunFam | Syntaxin 10 | 3 | 105 | - | - | |
| Bisa01g3099 | 246 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 154 | 216 | IPR000727 | - | |
| Bisa01g3099 | 246 | SUPERFAMILY | SNARE fusion complex | 153 | 216 | - | - | |
| Bisa01g3099 | 246 | Gene3D | - | 3 | 105 | - | - | |
| Bisa01g3099 | 246 | CDD | SNARE_Qc | 158 | 214 | - | - | |
| Bisa01g3099 | 246 | Coils | Coil | 12 | 32 | - | - | |
| Bisa01g3099 | 246 | Gene3D | - | 161 | 225 | - | - | |
| Bisa01g3099 | 246 | CDD | SNARE_NTD_AtSYP61-like | 5 | 103 | - | - | |
| Bisa01g3099 | 246 | SUPERFAMILY | t-snare proteins | 5 | 102 | IPR010989 | GO:0016020|GO:0016192 | |
| Bisa01g3099 | 246 | Coils | Coil | 192 | 212 | - | - | |
| Bisa01g3099 | 246 | FunFam | syntaxin-61 isoform X1 | 157 | 218 | - | - | |
| Bisa01g3099 | 246 | PANTHER | GOLGI SNARE BET1-RELATED | 137 | 242 | - | - | |
| Bisa01g3099 | 246 | Pfam | Syntaxin 6, N-terminal | 6 | 99 | IPR015260 | GO:0016020|GO:0048193 | |
| Bisa01g3099 | 246 | Pfam | SNARE domain | 191 | 242 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa01g3099 | Bisa-ChrBisa01 | 69087619 | 69090999 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa01g3099 | 56 | 246 | SNARE and Associated Proteins | AT1G28490 | 68.063 | 9.23e-92 | 267 |