Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3071 ATGGGCAGAGCCCGGATTCTGGCTCAAAAACCCAAAAAAAAAAAAATCGAAGAACTTAAAACCCTATTCCCAGTAAGGTACAAAACCCCTCCCGCCTTCAGCGTTGGGACTCTTGGCTCTGGTACTTGCTGCTTTCGCGGTTGGTGGAATTTAAGCTTAGTTCCAGATTCAAACATGGGTAGGATAAAAGACGATGCCGCCATAGTCAGCAAGCCAGTGGCCGAGGAAGCTCCCGTCTACTTTGGAGTCAAATCAGAGAAGAAGAAGAAAATGAAGAAGAAAGATGAGCAAAACGAAGCTAGTCCCAAAAGAAAGCTTGAGGAATTTGATACTCGGGATAGAAATGAACCGAAAAGTAAGAAGCGTAAGAAAGACAGGAAGTCGAAAGAGACCGTGGAGGAAACCGAAACTGTCAAAAGAAATGACGCTGAGAACGGTGACGATGATGAACCTGTGAGAGATGGGCATGTGGTGGTTACTGGGAAGAATATCAAAGACGGAAAATATGCGCCCACGAAAACTTTTGCTGCATCTGGCCTTCCCGAGAATGTCTTGGAGTGCTGCAAGAGATTTGAAAGGCCATCCCCCATTCAGTCCCGAGCGTGGCCTTTCTTGTTGAACGGTCGTGATTTGATTGGCATTGCGGCAACTGGGTCAGGAAAGACATTGGCTTTTGGAATACCGGCTATTATGCATGTGTTGAGAAAGCGCAAGAGTAAAGTGTCAAAGGGTCGGAATCCTCTTTGCCTTGTGCTCTCTCCCACGAGAGAGCTGGCTCAACAAATTTCAGAAGTTTTGTGTGATGCTGGGAGTTCTTGTGGTGTGGAATCTATTTGCCTGTATGGTGGAACCTCCAAAGGGCCACAAATATCTTCATTAAAATCTGGCATTGACATTGTCATTGGAACTCCTGGTCGCATAAAGGATCTGATTGAAATGGCTGTTTGTCGCCTGAAAGATGTTTCATTTGTGGTTCTTGATGAAGCAGATCGAATGCTTGACATGGGATTTGAGCCAGCAGTTCGCTCTATACTGGGTCAGACATGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTCTACCAGTCCACCACTTAGCTCAAGAGTTTATGGATCCTAATCCTGTGAAAGTTGTTGTAGGGTCTGAAGATTTAGCTGCCAATCATGATGTGATGCAGATAGTTGAGGTCTTGGATGATCGTTCACGCGATAGGCGCTTGGTTGCTCTGCTAGAAAAGTATCACAAATCTCAAAGGAATCGAGTACTTGTTTTTGTTCTATACAAATTGGAAGCCACAAGAGTTGAAAAGATGCTTCATGAAGGGCGTTGGAAGGTTGTCTCAATACATGGGGACAAGGCACAATATGAACGTACAAAGGCACTATCATTATTCAAGAACGGAAGCTGTCCTTTGATGATTGCTACTGATGTTGCTGCTCGGGGGTTGGATATTCCAGATGTTGAAGTAGTGATCAATTATAGTTTTCCTCTAACAACAGAAGATTATGTTCATAGAATTGGCCGGACAGGACGAGCTGGTAGGAAGGGTGTTTCCCATACATTCTTCACACAGCAGAACAAGGGCCTTGCTGGAGAGCTAGTAAATGTTTTAAGAGAAGCAGGGCAAATTGTGCCAGACGACCTGTTGAAATTTGGCACGCATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAGATTTCTGCTGATGCTCCAAAGTCACAAAAAATCACATTTGACAACTCTGACGAAGATTAA 1776 0.4448 MGRARILAQKPKKKKIEELKTLFPVRYKTPPAFSVGTLGSGTCCFRGWWNLSLVPDSNMGRIKDDAAIVSKPVAEEAPVYFGVKSEKKKKMKKKDEQNEASPKRKLEEFDTRDRNEPKSKKRKKDRKSKETVEETETVKRNDAENGDDDEPVRDGHVVVTGKNIKDGKYAPTKTFAASGLPENVLECCKRFERPSPIQSRAWPFLLNGRDLIGIAATGSGKTLAFGIPAIMHVLRKRKSKVSKGRNPLCLVLSPTRELAQQISEVLCDAGSSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIKDLIEMAVCRLKDVSFVVLDEADRMLDMGFEPAVRSILGQTCSVRQMVMFSATWPLPVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDRRLVALLEKYHKSQRNRVLVFVLYKLEATRVEKMLHEGRWKVVSIHGDKAQYERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGRKGVSHTFFTQQNKGLAGELVNVLREAGQIVPDDLLKFGTHVKKKESKLYGAHFKEISADAPKSQKITFDNSDED 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3071 591 FunFam ATP-dependent RNA helicase RhlB 382 559 - -
Bisa01g3071 591 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 123 551 - -
Bisa01g3071 591 Pfam Helicase conserved C-terminal domain 407 516 IPR001650 -
Bisa01g3071 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 529 IPR027417 -
Bisa01g3071 591 Pfam DEAD/DEAH box helicase 196 363 IPR011545 GO:0003676|GO:0005524
Bisa01g3071 591 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 173 199 IPR014014 GO:0003724
Bisa01g3071 591 MobiDBLite consensus disorder prediction 85 118 - -
Bisa01g3071 591 CDD SF2_C_DEAD 393 525 - -
Bisa01g3071 591 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 325 333 IPR000629 -
Bisa01g3071 591 Gene3D - 383 558 IPR027417 -
Bisa01g3071 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 555 IPR001650 -
Bisa01g3071 591 MobiDBLite consensus disorder prediction 85 159 - -
Bisa01g3071 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 379 IPR014001 -
Bisa01g3071 591 Gene3D - 113 382 IPR027417 -
Bisa01g3071 591 CDD DEADc 191 380 - -
Bisa01g3071 591 MobiDBLite consensus disorder prediction 126 159 - -
Bisa01g3071 591 SMART helicmild6 435 516 IPR001650 -
Bisa01g3071 591 SMART ultradead3 190 396 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3071 Bisa-ChrBisa01 67515928 67524138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3071 171 524 Eukaryotic Initiation Factors Gene Family AT3G19760 33.146 2.77e-55 191