Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3054 ATGGAACCCAACGAAATATTAGAGGAGCTGCTAAACCTAGAGGTGGAGATTCAAGATGTCGAAGATCAAATAAGGGCATTGATTGAAAGACAAGAGAAGTTGTATGAGAGAAAATCAGAGCTGAAGGGTATACTGGAAGCATGTGAAGAATCTGGAAACCAGGTTAATAATGGCGCTCCAAGTACTGTGGAAAATTGGTCTGGGCCGTTTGGATGGGATTCTGAAGCAGATGATGTCAGGCTGAATATTTTTGGCATTTCTACATATCGTGCAAATCAAAGAGAGATCATTAATGCCATCATGAGTGGAAGGGATGTTCTGGTGATTATGGCTGCGGGTGGGGGCAAGAGCCTCTGCTACCAGCTTCCTGCTATTCTTCGTGATGGAATTGTTCTTGTCGTTAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTGATGGGATTGACAGCTTTAGGAATCCCAGCATATATGTTGACGTCAACAACAACTAAGGACGATGAGAAGTTCATATACAAGGCTTTGGAAAAAGGTGAGGGGGATCTCAAAATATTGTACGTCACACCAGAAAAGATATCAAAGAGCAAGAGATTTATGTCAAAACTTGAAAAATGCCATCATGCTGGCCGTCTCTCTCTAATTTCGATAGATGAGGCACATTGCTGTAGTCAGTGGGGTCATGACTTTAGACCTGACTACAAGAACCTTGGTATTCTCAAGACTCAATTTCCTACTGTTCCATTAGTTGCTTTGACTGCAACAGCTACTCAAAGGGTCCAAAATGATTTGATGGAGATGTTGCACATTCCAAGATGTGTCAAATTTGTCAGTACAGTCAACAGACCAAACCTATTTTATATGGTAAAGGAAAAGTCATCAGTTGGTAAGGTGGTTATTGATGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATAAGGAATCTGGGATAGTTTATTGCTTCTCTAGGAAAGAATGTGAACAGGTTGCAAAGGAGTTACGCGAGAGGGGAATTTCAGCAGATCATTACCATGCAGATATGGATGTATATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATGGCAAGTTGCAGGTCATAGTTGGTACGGTAGCATTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGTCGAGATGGACTTCCATCTGAGTGTGTACTTTACTTTAGACCTGGTGATGTCCCCCGACAGAGTTCTATGGTATTCTACGAAAATTCGGGACTGCAGAATTTGTATGATATAGTACGATATTGTCAGTCCAAAAAAAAATGTCGCCGCAGTGCCTTTTTCCAGCACTTTGCTGAGACTCAGCAAGACTGCAATGGGATGTGTGACAACTGTGCATTCTCAAATGAAGTGAAAGAATTAGATGTCTCTCGTCATGCGAAGCTGGTGATTTCTTTGTTGCAAGATATGCAAGAGAATGATCAGAGGTTGACAATGTTGCAGTTAGTTGACAAAATGAAAATAAAGCAGAAGGAACTAGGTTCTGAGTTAAAAAGAGAGGAAGTAGAGCAGCTTATCTTACAGCTTTTATTAGAGCGGGTTTTGAAAGAAGAGTTTCAGCATACAGCTTATGCCACAAATGCTTATATAGCTGTGGGGCCATTAGCCAAGCAAATATTGCAAGGAAAGAAGACTGTTAAAATTGAGATTTACAGTGAACAGAGAACTAAGGTTGGTGTGAGATCAACAAAACGCAGCATTGGTTCCTCGGGTCTGGAGCTAAAGCTTGATGAGCTGAGAAAGGAATTGTCTTCCATTCATGGAGGAATACTCCCACACTCTGTTTTGTCTACTCAACAAATCAGCCTAATAAGTTCTCAGAAACCAAATTCGCTGGAGCAGTTGGAGAAGGTAATTGGAAAATTGAAGACAGAAAAGTATGGAGATAGAATACTTGCGCAAATTCAAAAGTATTCTGATTTCAAGCCGCCTGATGAGAGAGTTGAACAAGACTCCGATGGCCGAGCTGCAAAGAGGTCCAAGACCAAGAAAAATGTTGTGCTTGTTGAGAGTAGTGAAGATGAAGCATGA 2118 0.4122 MEPNEILEELLNLEVEIQDVEDQIRALIERQEKLYERKSELKGILEACEESGNQVNNGAPSTVENWSGPFGWDSEADDVRLNIFGISTYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAILRDGIVLVVSPLLSLIQDQVMGLTALGIPAYMLTSTTTKDDEKFIYKALEKGEGDLKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPTVPLVALTATATQRVQNDLMEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNKESGIVYCFSRKECEQVAKELRERGISADHYHADMDVYAREKVHMRWSNGKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKKKCRRSAFFQHFAETQQDCNGMCDNCAFSNEVKELDVSRHAKLVISLLQDMQENDQRLTMLQLVDKMKIKQKELGSELKREEVEQLILQLLLERVLKEEFQHTAYATNAYIAVGPLAKQILQGKKTVKIEIYSEQRTKVGVRSTKRSIGSSGLELKLDELRKELSSIHGGILPHSVLSTQQISLISSQKPNSLEQLEKVIGKLKTEKYGDRILAQIQKYSDFKPPDERVEQDSDGRAAKRSKTKKNVVLVESSEDEA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3054 705 Gene3D - 280 476 IPR027417 -
Bisa01g3054 705 FunFam ATP-dependent DNA helicase 599 669 - -
Bisa01g3054 705 Pfam Helicase conserved C-terminal domain 302 406 IPR001650 -
Bisa01g3054 705 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Bisa01g3054 705 Gene3D - 47 279 IPR027417 -
Bisa01g3054 705 FunFam ATP-dependent DNA helicase 46 279 - -
Bisa01g3054 705 Pfam HRDC domain 604 663 IPR002121 GO:0003676
Bisa01g3054 705 Gene3D - 480 580 IPR036388 -
Bisa01g3054 705 SUPERFAMILY HRDC-like 604 669 IPR010997 GO:0000166|GO:0044237
Bisa01g3054 705 CDD SF2_C_RecQ 280 416 - -
Bisa01g3054 705 MobiDBLite consensus disorder prediction 671 705 - -
Bisa01g3054 705 SMART RQC_2 484 581 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bisa01g3054 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Bisa01g3054 705 CDD DEXHc_RecQ1 71 279 - -
Bisa01g3054 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Bisa01g3054 705 Coils Coil 512 532 - -
Bisa01g3054 705 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 661 - -
Bisa01g3054 705 Pfam RQC domain 481 585 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bisa01g3054 705 Coils Coil 10 37 - -
Bisa01g3054 705 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Bisa01g3054 705 NCBIfam RecQ family ATP-dependent DNA helicase 82 509 IPR004589 GO:0004386|GO:0006310
Bisa01g3054 705 Gene3D HRDC domain 599 669 IPR044876 -
Bisa01g3054 705 FunFam ATP-dependent DNA helicase 480 580 - -
Bisa01g3054 705 SMART helicmild6 326 407 IPR001650 -
Bisa01g3054 705 Pfam RecQ zinc-binding 419 475 IPR032284 -
Bisa01g3054 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Bisa01g3054 705 SMART ultradead3 85 288 IPR014001 -
Bisa01g3054 705 FunFam ATP-dependent DNA helicase 280 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3054 Bisa-ChrBisa01 66694863 66737934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3054 315 421 Eukaryotic Initiation Factors Gene Family AT3G19760 21.495 7.24e-08 53.5