Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3004 ATGCCATTGGCTGTGGATGAAAGCCAGCAGTTGGTTGATGCACAGACTCAACTCCAAGCTTCTTCGGTTCCCGTTCCAGTAGAGGAAACTGTAAATCATGTTGAAAATGGGAAGGTAGTGACACCTGCCGATGATAGAAATGAAAAACCAGATGCCATTGCAGATGGTGCTCCACAACAAGAAGTTCACGATACTCTTCGCCCTGTCCCTGTAGAAGTTAAGGTTAAAACTGACTCTGAACACACTTTTGATGTGAAGACTGAAGTTGAAGAATCTCTGAGAAATACAGGTATAGAGAATGATGCCAATCCATGCAAAAATCATGATACTGCTGACATAGTTGTAGAGGTCAAGCCAGAAGCTTGTGATGTTCTTAATGGTAAACATAAAGGTGACTCCATACTCACAAGTCACGTCGAACCTACTACACCTCAAGGTGTTCCTGCAGATACAAAAACTGAGATCATGAATGGAGTAAAAGTTGAGAATAGGGCTAATGAAAAGCTGGCTGCTGCACCTGCAGATAATGGGAATTCAAACTCAAAGAACTTGTTCTTTTTGGATGCTGACCATTCATATGATGGTAATGAGTCAGGAACAGAAGAGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCAAAGTTCTATGGAGAGGGGCTTAATTGCCTTAAGTTGTGGAGAGCTGTTACCAGATTGGGTGGCTATGATAAGGTAACCTCGTGTAAGTTATGGCGGCAAGTAGGAGAGTCCTTCAAACCTCCAAAGACCTGCACCACAGTTTCATGGACATTTCGAGGTTTTTATGAGAAGGCACTTCTTGATTATGAAAGGCATAAAACTATAGGTGGTGAGCTTACTGTACCCATTGCTTCACATGCAGAGCATTTGAATATTGAAAATCAGTGTAATCAGGCTTCAGCATCAGGTAGAGCACGAAGAGATGCTGCAGCACGGGCTATGCAAGGTTGGCATTCACAACGTCTTCTTGCTAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTATGTCTATGCAAAAGCGTGAAAAGCAGCTTAAAAGTGTCAATTTACTTAAACGTAAGAAACCATCTTACATGGATAGTGCGGTCAAAGCGGCACGTAGTAAACCATCTAAACCACAATTGGACACATCAGTGATTGATATTGGACCTCCTGCTGAGTGGGTAAAAGTCAATGTGCAAAGAACTAAAGATTGTTTTGAGATCTATGCTTTGGTTCCTGGGCTTCTTCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGTGGTGAACCTGAGCATCCTGATAATCCTTGGGGTGTGACACCTTTCAAGAAGGTTGTGAGCTTGCCTTCAAGGATAGATCCTCATCAAACATCAGCTGTGGTGACGCTGCACGGACAGTTGTTTGTTCGTGTCCCATTTGAGCAATCAGAATAG 1497 0.4295 MPLAVDESQQLVDAQTQLQASSVPVPVEETVNHVENGKVVTPADDRNEKPDAIADGAPQQEVHDTLRPVPVEVKVKTDSEHTFDVKTEVEESLRNTGIENDANPCKNHDTADIVVEVKPEACDVLNGKHKGDSILTSHVEPTTPQGVPADTKTEIMNGVKVENRANEKLAAAPADNGNSNSKNLFFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTIGGELTVPIASHAEHLNIENQCNQASASGRARRDAAARAMQGWHSQRLLANGEVSDPIIKDRNSMSMQKREKQLKSVNLLKRKKPSYMDSAVKAARSKPSKPQLDTSVIDIGPPAEWVKVNVQRTKDCFEIYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3004 498 SMART ARID_2 198 288 - -
Bisa01g3004 498 SUPERFAMILY HSP20-like chaperones 406 494 IPR008978 -
Bisa01g3004 498 Pfam ARID/BRIGHT DNA binding domain 204 288 IPR001606 GO:0003677
Bisa01g3004 498 Gene3D - 400 498 IPR008978 -
Bisa01g3004 498 Pfam Hsp20/alpha crystallin family 415 497 IPR002068 -
Bisa01g3004 498 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 68 497 IPR045147 GO:0006357
Bisa01g3004 498 FunFam AT-rich interactive domain-containing protein 3 201 300 - -
Bisa01g3004 498 SUPERFAMILY ARID-like 196 301 IPR036431 GO:0003677
Bisa01g3004 498 SMART bright_3 202 293 IPR001606 GO:0003677
Bisa01g3004 498 CDD ACD_sHsps_p23-like 417 493 - -
Bisa01g3004 498 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 398 498 IPR002068 -
Bisa01g3004 498 CDD ARID 203 288 - -
Bisa01g3004 498 Gene3D - 201 296 IPR036431 GO:0003677
Bisa01g3004 498 ProSiteProfiles ARID domain profile. 201 292 IPR001606 GO:0003677
Bisa01g3004 498 FunFam AT-rich interactive domain-containing protein 3 390 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3004 Bisa-ChrBisa01 64673576 64683159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3004 185 496 ARID Transcription Factor Family AT1G76510 61.783 8.17e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bisa01g3004 HSP20 1.1e-05 CL0190