Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2972 ATGAAGCGCGACTACTACGAAATCTCCGACGACGAATGGGAGAACCATTCCTTTAAGCCCTCTAGAGTTCTCAAGAAAGCGCAGACTTCTGCTCCACCTCCTATAGAATCCTTTGCTTTTGGGTCTAGTAAGCCCGATGATTCTGACCAAAGTAGCGATGGTTGCGTCCAAGTGACGGAAAATTTTGAGGAGCAAGGTTTGGAGGATGAGGATGTGGAGCTGGAGGGAGGCACGTCTGGGACAGTGGCAAATCGTGGCCGTCGGTTCGTTGTTGATGATGAGGAGAGCGACAGGGATGTTGCGGAAGTATATGAAATAAGGTCAACTGATGAGGACGAAGGAGAAGAAGAGGAAGGGGATGTAAATGACGTGGTGGGTAGGGCTTTGCACAAGTGTGCAAGAATATCTGCAGAATTGAAAAGAGAGCTATATGGGTCCTCGGGCACTGCTTGTAATTCGTATTCTGAGGTGGAATCTTCTTCAGTGAGAATTGTAAATCAGGATGATGTTGATTTGGCATGTGGGTCTGAGGATTCTGATTTCCAGCCTGTCCTCAAGCCATATCAGCTGGTTGGTGTCAACTTTCTACTTCTGTTATATCGGAAGGGTATTGGAGGAGCTATATTGGCAGATGAAATGGGTCTTGGGAAAACAGTTCAGGCCATCACATATTTAACCCTGTTGAAACACTTGCACAATGATCCTGGTCCACATCTTATAGTATGTCCTGCTTCTATTTTGGAAAATTGGGAAAGGGAGCTACAAAAGTGGTGCCCATCCTTTTCTGTTCTACAATATCATGGCTCTGGACGAGCAACGTACTGCAAGGAGTTGAACTCTCTGTCCAAGGCGGGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGTCACAGTGCACAGCAGAAAGATGATCGGAAAATTCTGAAGCGTTGGAGGTGGAGCTGTGTTTTGATGGATGAGGCACATGCTTTGAAGGATAAAAATAGCTATAGGTGGAAGAATTTGATGTCTGTTGCTCGAAATGCAAACCAGCGTTTGATGCTGACAGGGACACCGCTTCAAAATGATCTACATGAGTTATGGTCATTGTTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGATGTTGACTTGAAAAAGTTACTAAATGCAGAAGATGGAGATTTAGTTGGTCGCATGAAGTCCATCCTGGGGCCATTTATTTTACGGCGGCTTAAATCTGATGTTATGCAGCAACTTGTTCCTAAAATACAACAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAAAATGCTTATAATGAAGCCATTGAAGAGTATCGTGCTATTTCACAAGCTCGAATGGCAAAATGTTCAGGGCCTAACTCAAATAATATTGTTGAAGTTCTTCCTCGTCGACAGATTAACAACTATTTTGTTCAGTTCCGCAAGATTGCAAACCATCCCTTGTTAGTGAGGCGAATCTATAGTGATGAGGATGTTATTCGCTTTGCTAAGAAGTTACATCCAGTAGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATTGACGAACTTAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTGCTTCACTATGGTGTCACTGATAGAAAGGGCATCCTTCCAGATAAAAGTGTTATGCTTTCTGCTAAATGTCGGGCCTTAGAAGAACTTCTTCCTTCACTTCGAAAGGGCGGTCATCGTGTTTTAATATTTAGTCAATGGACATCAATGCTTGACATATTGGAATGGACGCTAGATGTCATTGGATTGACCTACAGACGTCTTGATGGAAGTACACAGGTAACAGAGAGGCAAACAATAGTTGATACGTTTAATAATGATACTTCAATATTTGCGTGCTTGCTGTCCACAAGAGCTGGAGGACAAGGCTTGAACTTGACAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAATCCACAGATTGATAGACAGGCGGAAGATCGCTGTCATCGGATAGGTCAAACGAAGCCTGTAACTATATACCGGCTGGTGACCAAGGGTACAGTCGATGAAAATGTTTACGAGATTGCAAAAAGAAAGCTTGTGTTGGATGCTGCTGTACTCGAGTCCGGCCTAGAGATGGATAATAAAGGAGACATGCCTGAGAAGACCATGGGAGAGATATTATCTGCAATTTTATTGGGTTAA 2208 0.428 MKRDYYEISDDEWENHSFKPSRVLKKAQTSAPPPIESFAFGSSKPDDSDQSSDGCVQVTENFEEQGLEDEDVELEGGTSGTVANRGRRFVVDDEESDRDVAEVYEIRSTDEDEGEEEEGDVNDVVGRALHKCARISAELKRELYGSSGTACNSYSEVESSSVRIVNQDDVDLACGSEDSDFQPVLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDPGPHLIVCPASILENWERELQKWCPSFSVLQYHGSGRATYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLNAEDGDLVGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVVMEKQQENAYNEAIEEYRAISQARMAKCSGPNSNNIVEVLPRRQINNYFVQFRKIANHPLLVRRIYSDEDVIRFAKKLHPVGAFGFECTLDRVIDELKSYNDFSIHRLLLHYGVTDRKGILPDKSVMLSAKCRALEELLPSLRKGGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGLEMDNKGDMPEKTMGEILSAILLG 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2972 735 PANTHER SNF2/RAD54 HELICASE FAMILY 105 711 - -
Bisa01g2972 735 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 564 726 IPR001650 -
Bisa01g2972 735 Pfam Helicase conserved C-terminal domain 561 673 IPR001650 -
Bisa01g2972 735 CDD SF2_C_SNF 551 684 - -
Bisa01g2972 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 714 IPR027417 -
Bisa01g2972 735 Gene3D - 421 496 IPR027417 -
Bisa01g2972 735 MobiDBLite consensus disorder prediction 21 54 - -
Bisa01g2972 735 SMART helicmild6 590 673 IPR001650 -
Bisa01g2972 735 SMART ultradead3 181 386 IPR014001 -
Bisa01g2972 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 411 IPR027417 -
Bisa01g2972 735 Pfam SNF2-related domain 205 491 IPR000330 GO:0005524|GO:0140658
Bisa01g2972 735 Gene3D - 547 730 IPR027417 -
Bisa01g2972 735 FunFam Protein CHROMATIN REMODELING 19 isoform A 156 434 - -
Bisa01g2972 735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 376 IPR014001 -
Bisa01g2972 735 CDD DEXHc_Snf 185 378 - -
Bisa01g2972 735 Gene3D - 184 420 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2972 Bisa-ChrBisa01 63308941 63330549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2972 206 700 RAD5 or RAD16-like Gene Family AT5G22750 27.805 8.55e-48 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa01g2972 SNF2_N 4.6e-56 CL0023