Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa01g2949 | ATGACTCTGAGAGGCTTGGTCTCAATTGTCTTCAACCTAATTGGTCTTTCCTCACACAAGATCAAGCAGAATCCATCTCAATCTTCATCTTCAGCAGAAGTGCCAAGTTTTATTGAGAGTATTGAAGTTGGATGGTGTTGTGTGTGCTTGTCGAGGCTTAAGGAGAAAGACGAGACGAGGGTTCTTCCTTGCTTGCACAAATTCCATAAGCTTTGTGTTGATAAATGGCTCAAGGGTCGTCACAAAACATGTCCTCTTTGTCGCTTCTCAATGGGAAAAGAAGATGTGGCTATTTGCAGTGCAGAGCCATTCACTGACGAAATGCTTGATCCCGTTCATATGGAATTTATTTGGCCCCCTAACCCGTGCTATACGTGA | 378 | 0.4365 | MTLRGLVSIVFNLIGLSSHKIKQNPSQSSSSAEVPSFIESIEVGWCCVCLSRLKEKDETRVLPCLHKFHKLCVDKWLKGRHKTCPLCRFSMGKEDVAICSAEPFTDEMLDPVHMEFIWPPNPCYT | 125 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa01g2949 | 125 | SUPERFAMILY | RING/U-box | 45 | 92 | - | - | |
| Bisa01g2949 | 125 | Pfam | Ring finger domain | 46 | 88 | IPR001841 | - | |
| Bisa01g2949 | 125 | ProSiteProfiles | Zinc finger RING-type profile. | 46 | 88 | IPR001841 | - | |
| Bisa01g2949 | 125 | PANTHER | TARGET OF ERK KINASE MPK-1 | 20 | 93 | - | - | |
| Bisa01g2949 | 125 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 103 | IPR013083 | - | |
| Bisa01g2949 | 125 | SMART | ring_2 | 46 | 87 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa01g2949 | Bisa-ChrBisa01 | 62137251 | 62138112 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa01g2949 | 15 | 91 | C3H Transcription Factor Family | AT1G04790 | 42.857 | 7.46e-14 | 65.1 |