Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2915 ATGGGAGGTGACAGTGCTGCTAGTGACGCGACGGAATCGAAGGGTACTAGTGGAGTGAACATCAACATTCGATGCTCTAATGGTTCGAAGTTTTCGGTCCAGATTAGTCTCGACTCCACCATCGGATCATTCAAGGAAGTTGTCGCTCAGAAGTGCGATATCCCATCCGATCAACAGCGGCTGATTTATAAAGGTCGGATCCTAAAGGATGACCAAACCCTGCAAAGCTATGGTTTGGAGGCTGATCACACTGTACATGTGGTTCGTGGTTTTGCATCCACTGCACCAACCAATACAGCTGGTGGGACCAATGCCACAACAAATAATACAAGGGCTTCTGGTGCTAACGAAGGTGGTGGTTTTGGAGGGTCTGGTTTTGCAGCTTCATTGTTTCCTGGGTTAAGTCTCAATGGGAGTGGGGGTAATGGCTTGTTTGGAGCGGGCCTTCCAAATCTTGAACAAATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAAATAATGAACACACCTGCTATGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAGTAACCCACAGATGCAAGAGCTCATGGATCGGAACCCTGAGCTAGCACACATACTTAATGATCCAAACACTCTCCGCCAAACACTTGAAGCTACAAGAAATCCCGAGATCATGCGTGAAATGATGAGAAATACTGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAAGGATTTAACATGCTTAGGCGGATGTATGAAAATGTTCAAGAGCCATTCTTAAATGCCACAATGATGGCTGGTAATACCGGAAATGATAACTCTAACCTGTTTGCAGCACTGTCTGGGATTCAAGGTGGCGAATCCAGGAATCAATCAAATAACCCCTCAACTATTAATTCTGAAGCAACTACTGGTTCACCCTCCCCCAATACTAGCCCACTTCCTAATCCTTGGACCTCTACTGGAACTGGAGGCACCCAAAACAGCACCACAAGGTCAATTAGTGGAGGGAATGCTAGGCCACATGCACCTACTGGCTTAGGAGGACTTGGTCTGCCGGATCTTGAAGGTTTGGGGGGCGCTATGCCGGATCCCACTTTATTGACCCAGTTAATGCAAAACCCAGCCATTTCACAAATGATGCAAATTATCCTTTCCAACCCACAGGCTATTAATCAGATTCTTGGTGTAAATGCTGAGCAGCGTGGCATGCCTGATTTAAATTCTCATCTTAGACAAATGATGCAAAACCCAGAGTTCATTCGCTTGTTTTCTTCACCTGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAGCACTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAGGAATCAGGTCAAACTGGCAGAGGCACTGGAACAATAAATAACATGGGGTTGGAGATGTTATCAAATATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTACCAAGCAGACCTGACGAGCCACCGGAGCAATTGTATGCCACACAGCTTTCGCAACTTCAAGAGATGGGCTTCTTTGACACGCAAGAAAACATAAGGGCTCTCATTGCCACTTCAGGTAATGTTCATGCAGCGGTTGAACGGCTATTGGGGAACTCGGGTCAGTAG 1632 0.4571 MGGDSAASDATESKGTSGVNINIRCSNGSKFSVQISLDSTIGSFKEVVAQKCDIPSDQQRLIYKGRILKDDQTLQSYGLEADHTVHVVRGFASTAPTNTAGGTNATTNNTRASGANEGGGFGGSGFAASLFPGLSLNGSGGNGLFGAGLPNLEQMQQPFISNPNLMREIMNTPAMQNLINNPEIVRNLIMSNPQMQELMDRNPELAHILNDPNTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATMMAGNTGNDNSNLFAALSGIQGGESRNQSNNPSTINSEATTGSPSPNTSPLPNPWTSTGTGGTQNSTTRSISGGNARPHAPTGLGGLGLPDLEGLGGAMPDPTLLTQLMQNPAISQMMQIILSNPQAINQILGVNAEQRGMPDLNSHLRQMMQNPEFIRLFSSPETMQQLLSFQQALLSQLGQQQSTQESGQTGRGTGTINNMGLEMLSNMFGGLGAGSLAVPSRPDEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2915 543 FunFam Ubiquitin domain-containing protein DSK2b 189 245 - -
Bisa01g2915 543 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Bisa01g2915 543 MobiDBLite consensus disorder prediction 288 362 - -
Bisa01g2915 543 SUPERFAMILY UBA-like 497 539 IPR009060 GO:0005515
Bisa01g2915 543 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 495 540 IPR015940 -
Bisa01g2915 543 MobiDBLite consensus disorder prediction 94 116 - -
Bisa01g2915 543 CDD UBA_PLICs 501 539 - -
Bisa01g2915 543 CDD Ubl_Dsk2p_like 19 91 - -
Bisa01g2915 543 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Bisa01g2915 543 PANTHER UBIQUILIN 14 538 IPR015496 -
Bisa01g2915 543 SMART uba_6 501 539 IPR015940 -
Bisa01g2915 543 MobiDBLite consensus disorder prediction 94 115 - -
Bisa01g2915 543 FunFam Ubiquitin domain-containing protein DSK2b 484 542 - -
Bisa01g2915 543 SMART CBM 142 179 IPR006636 -
Bisa01g2915 543 SMART CBM 192 231 IPR006636 -
Bisa01g2915 543 SMART CBM 368 409 IPR006636 -
Bisa01g2915 543 SMART CBM 411 437 IPR006636 -
Bisa01g2915 543 FunFam Ubiquitin domain-containing protein DSK2b 16 105 - -
Bisa01g2915 543 Gene3D - 7 102 - -
Bisa01g2915 543 SUPERFAMILY Ubiquitin-like 9 106 IPR029071 -
Bisa01g2915 543 SMART ubq_7 19 90 IPR000626 GO:0005515
Bisa01g2915 543 Gene3D - 483 543 - -
Bisa01g2915 543 PRINTS Ubiquitin signature 50 70 IPR019956 -
Bisa01g2915 543 PRINTS Ubiquitin signature 71 92 IPR019956 -
Bisa01g2915 543 Gene3D - 187 245 - -
Bisa01g2915 543 MobiDBLite consensus disorder prediction 288 342 - -
Bisa01g2915 543 Pfam UBA/TS-N domain 501 537 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2915 Bisa-ChrBisa01 60224075 60232042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2915 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 2.12e-08 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1896 11 41146658 41152146 Bisa01g2915 01 60224075 60232042 CCT
Bisa01g2915 01 60224075 60232042 Bisa01g2915 01 60224075 60232042 ECH