Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2850 ATGAGAACGCTTTGTGACTCTTGTGAGAGCGCCGCCGCCATCGTCTTCTGCGCCGCCGATGAGGCCGCCCTCTGCCGTGCCTGCGACGAGAAGGTTCACATGTGTAATAAGCTAGCTAGCCGGCATGTAAGGGTTGGTCTTGCTAGTCCAAGTGATGTACCGCGCTGTGATATATGTGAAAATGCACCCGCTTTCTTCTATTGCGAGACAGATGGAAGTTCTCTTTGTTTGCAGTGCGATATGATGGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTATTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAACCTGGTCCTGCAGAAAACCCAGCCTCAAAACCTGTGGAACCAGGTGAGAATAAAAGAGGACAGAACCCACTTGCCAAAGTAAAAATGGGAGAGAAACAACAAAATCACAGGATGACTCTGGTTGCAACACCAGAGCCTGATGTTGATGGGCATGCCAAGATGGAGACTAACATGATTGATTTGAACATGAAACCTCAGAGAATACATGACCATGCTTCCAATAATCAGCCATGA 555 0.4721 MRTLCDSCESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMMVHVGGKRTHGRYLLFRQRVEFPGDKPGPAENPASKPVEPGENKRGQNPLAKVKMGEKQQNHRMTLVATPEPDVDGHAKMETNMIDLNMKPQRIHDHASNNQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2850 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Bisa01g2850 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Bisa01g2850 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Bisa01g2850 184 CDD Bbox1_BBX-like 56 96 - -
Bisa01g2850 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Bisa01g2850 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Bisa01g2850 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Bisa01g2850 184 MobiDBLite consensus disorder prediction 103 158 - -
Bisa01g2850 184 CDD Bbox1_BBX-like 4 47 - -
Bisa01g2850 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bisa01g2850 184 FunFam B-box zinc finger protein 19 2 92 - -
Bisa01g2850 184 Gene3D Classic Zinc Finger 2 91 - -
Bisa01g2850 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2850 Bisa-ChrBisa01 57408113 57410231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2850 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 62.295 1.95e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Bisa01g2850 zf-B_box 1.8e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1766 11 39350662 39353386 Bisa01g2850 01 57408113 57410231 CCT
Bisa01g2850 01 57408113 57410231 Bisa11g1766 11 39350662 39353386 ECH
Bisa01g2850 01 57408113 57410231 Bisa01g2850 01 57408113 57410231 ECH