Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2841 ATGGAGTGCGAAGCTGCCTTCAAAACCAGTTTCAGGAAAGACACCTCCCTCAAATTCAGCCCCCAACCCCTTCTCGACGACTTAGCTTTCAATCTTCAAAATGTCGCCCCTTCTGATGACTTCTTTGTAGATGACCTTCTTGACTTCTCTCATGAAGACGCCCTCCAAGAAGAAGAACAACAACAACAACGCAAAGATGCCTCTGTTTCTGTTTCTGTTTGCCCTCAACAGCCCGACCAAAGCCGTGATTTTTCTAGCCTTATTACCAGTTTCTCTGCGAAAGACGAGTTTGTGTCCAGCGAGCTCACCTTTCCGGCGGATGATGAAGCCGACTTAGAGTGGTTGTCTCATTTCGTGGAGGATTCCTTCTTGGAATACTCCGCCGCCGCTTACCCCGCCGCAACTTCAGCGGAGAAGAATCCCAATAGCGAGATAGTTCTCGAACCCGAAACCCCTGTTTCGACCCAACCCTGTTTTAGAGCCCCGGTTCCGGCCAAGGCCAGAAGCAAACGTACGAGAACCGGAGTTCGGGTCTGGCCACTTGGGTCTCCTTCCTTCGCCGAGTCGTCCGCTAGCCCCTCCTCGTCTTCTTCCTCCTCGTCCCTTTCCGGTTCGTGGCTAATTTTCGCAACCCAAAACCTCGAGCAGGTTAGCTCGCCAGGGGTGAAGAAACCGAAGAAAAAGCAGGCGTCGGAGGCGGCCAGTAGCGGTGGGGCTCCGGCTCCGGCTCAAAGAAGGTGCAGCCATTGCGGCGTACAGAAGACCCCTCAGTGGCGGACGGGCCCGCTCGGAGCGAAAACGCTGTGCAACGCATGCGGGGTCCGATACAAATCGGGTCGGTTGTTACCCGAATATCGACCTGCTTGTAGCCCGACATTCTCGAGCGAATTGCACTCCAACCATCACCGGAAAGTGCTGGAGATGCGGCAGAAGAAGGAGATAATGAGCGACATCGGGTCGGGTTTGGACCCTTCATCGGCTGTCCCCAGTTTTTGA 996 0.5452 MECEAAFKTSFRKDTSLKFSPQPLLDDLAFNLQNVAPSDDFFVDDLLDFSHEDALQEEEQQQQRKDASVSVSVCPQQPDQSRDFSSLITSFSAKDEFVSSELTFPADDEADLEWLSHFVEDSFLEYSAAAYPAATSAEKNPNSEIVLEPETPVSTQPCFRAPVPAKARSKRTRTGVRVWPLGSPSFAESSASPSSSSSSSSLSGSWLIFATQNLEQVSSPGVKKPKKKQASEAASSGGAPAPAQRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEIMSDIGSGLDPSSAVPSF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2841 331 Gene3D - 241 315 IPR013088 GO:0006355|GO:0008270
Bisa01g2841 331 ProSitePatterns GATA-type zinc finger domain. 247 272 IPR000679 GO:0006355|GO:0043565
Bisa01g2841 331 ProSiteProfiles GATA-type zinc finger domain profile. 241 277 IPR000679 GO:0006355|GO:0043565
Bisa01g2841 331 SMART GATA_3 241 295 IPR000679 GO:0006355|GO:0043565
Bisa01g2841 331 MobiDBLite consensus disorder prediction 55 80 - -
Bisa01g2841 331 Pfam GATA zinc finger 247 281 IPR000679 GO:0006355|GO:0043565
Bisa01g2841 331 CDD ZnF_GATA 246 294 IPR000679 GO:0006355|GO:0043565
Bisa01g2841 331 PIRSF Txn_fac_GATA_plant 4 328 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bisa01g2841 331 MobiDBLite consensus disorder prediction 65 80 - -
Bisa01g2841 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 303 - -
Bisa01g2841 331 FunFam GATA transcription factor 239 320 - -
Bisa01g2841 331 MobiDBLite consensus disorder prediction 217 247 - -
Bisa01g2841 331 PANTHER GATA TRANSCRIPTION FACTOR 34 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2841 Bisa-ChrBisa01 57285648 57286739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2841 4 331 C2C2-Gata Transcription Factor Family AT5G66320 51.765 1.46e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa01g2841 GATA 4.6e-16 CL0167