Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2826 ATGAACGGCGGTTGCTTGGAGTTGCAGTTCGAAAACCCAGTAGGAGATGCTATTTCCAGAATCCAATTCGCCCCCAACTCAAACAATCTCCTTATATCTTCTTGGGACTCTAGTCTTCGCTTATACGATGTTGACAATTCGGTGCTTAGATTAGAGGCCCCGTCAGAAGCTGCGCTTCTGGATTGTTGTTTTCAAGACGACTTGGTTGCTTTCACTGCTGGTTCCGATGGATTGATCCGAAGGTATAACTTGCATTTGGGAATTATTGATACAGTGGGTAATCATGAGGATATAGCAACATGCATTGGATATTCCAATGAAATATGTCAGTTGATCACAACTGGATATGACAAGAAGATACAGCTGTGGGACAGTCGAATGAATAGTCTTTCAAGATCGATAAACCTAAGTGCAGAGGTGAACTCCATGTCTGTTTCTGGGTTAAATCTAACTGTTGGAATAGAAACATCAGTGCGTATTTATGATCTACGTTACTTTGACAAACCAGTTCAATCAAAGGAACCACACAATGGTACACAAATAAGATGCGTCAGTTCAATCCCGTACACAAAAGGATTTGCAGTTGGATCAGTAGATGGACGGGTGGCATTAGAGATTTCTGATTCATCTAGTTCAAAGGACATTGGATTTGTATTCCGGTGTCATCCTAAGTCAAAGGAGGGAAGGCATCATTTGGCATCAATTAATGACATCATATTCAGTCCACTTGTTCGTGGTGCTTTTGCCACTGGCGACAATGAAGGCTATGTAATGTTATGGGATGTTGGAAGTAGGAAAAGACTAATTGAGTTACCTAGGTACCCAAATAGTGTGGCATCCTTGTCATACAACCACGTGGGACTGCTTTTGGCTGTAACTTCAAGTTTCACATACCAAGAAGCAAACGAAATAGAAGAGCCTCCTCGTATATTCATCCACAATATGGACAACATTGATACTAGATCTGTTTCTGATGAATGTTCTAAGCTTCTGCTTCTCGTTTCTCTCTCATACTCTCACATACTCTCTCTATCTCTCTCTGTTTCGCGCGGAGTCATGTCGGACGAGGAGCACCATTTCGAGTCCAAAGCCGATGCCGGAGCTTCAAAGACCTTCCCTCAGCAAGCTGGTACCATCCGCAAGAACGGTTACATTGTGATCAAGAACAGGCCTTGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACATGCTAAGTGTCACTTTGTTGGCATTGACATTTTTACCGGGAAAAAGCTTGAAGATATTGTTCCTTCTTCCCACAACTGTGATGTCCCACATGTCAACCGCACTGACTACCAGCTGATTGATATCTCAGAGGATGGATTTGTGAGTCTGCTGACTGAGAGTGGTGGTACTAAGGATGACCTGAGGCTTCCAACCGATGAAAATCTGCTTACGCAGATCAAGGATGGATTTGCGGAGGGTAAAGATCTGGTTGTGAGTGTTATGTCTGCCATGGGTGAGGAACAGATCTGTGCCCTGAAGGATATTGGCCCCAAGTGA 1536 0.4368 MNGGCLELQFENPVGDAISRIQFAPNSNNLLISSWDSSLRLYDVDNSVLRLEAPSEAALLDCCFQDDLVAFTAGSDGLIRRYNLHLGIIDTVGNHEDIATCIGYSNEICQLITTGYDKKIQLWDSRMNSLSRSINLSAEVNSMSVSGLNLTVGIETSVRIYDLRYFDKPVQSKEPHNGTQIRCVSSIPYTKGFAVGSVDGRVALEISDSSSSKDIGFVFRCHPKSKEGRHHLASINDIIFSPLVRGAFATGDNEGYVMLWDVGSRKRLIELPRYPNSVASLSYNHVGLLLAVTSSFTYQEANEIEEPPRIFIHNMDNIDTRSVSDECSKLLLLVSLSYSHILSLSLSVSRGVMSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPTDENLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2826 511 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 437 506 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bisa01g2826 511 SUPERFAMILY WD40 repeat-like 14 294 IPR036322 GO:0005515
Bisa01g2826 511 Gene3D - 438 510 IPR012340 -
Bisa01g2826 511 Gene3D - 6 325 IPR015943 GO:0005515
Bisa01g2826 511 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 402 409 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bisa01g2826 511 PANTHER MRNA EXPORT FACTOR AND BUB3 5 316 - -
Bisa01g2826 511 SMART WD40_4 85 124 IPR001680 GO:0005515
Bisa01g2826 511 SMART WD40_4 3 43 IPR001680 GO:0005515
Bisa01g2826 511 SMART WD40_4 127 162 IPR001680 GO:0005515
Bisa01g2826 511 SMART WD40_4 166 208 IPR001680 GO:0005515
Bisa01g2826 511 SMART WD40_4 212 261 IPR001680 GO:0005515
Bisa01g2826 511 SMART WD40_4 44 83 IPR001680 GO:0005515
Bisa01g2826 511 NCBIfam translation initiation factor IF-5A 370 505 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bisa01g2826 511 SUPERFAMILY Nucleic acid-binding proteins 438 508 IPR012340 -
Bisa01g2826 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 270 IPR001680 GO:0005515
Bisa01g2826 511 FunFam Mitotic checkpoint protein BUB3.3 6 322 - -
Bisa01g2826 511 FunFam Eukaryotic translation initiation factor 5A 353 437 - -
Bisa01g2826 511 Gene3D - 353 437 IPR014722 -
Bisa01g2826 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 92 133 IPR001680 GO:0005515
Bisa01g2826 511 CDD S1_eIF5A 438 508 - -
Bisa01g2826 511 FunFam Eukaryotic translation initiation factor 5A 438 510 - -
Bisa01g2826 511 SMART eIF_5a_2 437 506 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bisa01g2826 511 SUPERFAMILY Translation proteins SH3-like domain 367 445 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2826 Bisa-ChrBisa01 56775896 56789441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2826 353 511 Eukaryotic Initiation Factors Gene Family AT1G13950 88.679 1.36e-98 292