Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2798 ATGGACGAGAGGAAGTTCGTGTGCAAGTATTGCAACAAGAAGTTCCCGTGTGGGAAGTCTCTGGGTGGACACATCAGGACCCATATGACTACTGACCATTCATCACAACCTCAATCCAACCAACTTCGAACCAATGCCTATGATAACAGAGTCATCAAGTTCGACGGTGGAAAGAAGAGGAAGCGAGATTTTGGTTCTGAAGAAATTGCTTCTGCTTCTGAAAACCCCATTTATGGCCTGAGGGAGAACCCCAAGAAGACAACGAGGTTCGTGCATTCCAACGCAGAGAGATTCTGCAAAGAATGCGGGAAAGGCTTTCTGTCTCTGAAAGCTCTCTGTGGCCACATGGCTTGTCACTCGGAGAAAGATAAGGGAACGACGATGAGCAAGTTCGAGAACAATTCTGGGTTCAGCGAGAAGCAGCAGAAATTGGTGATGGATAGCCAATCCGACACTGAGACTTCTGCTCCTAGGAGATCCCGGAGAATGAGGTTGAAGACTCTCAGTAGCAATGCTAACAATAATAATCCCCCTTCTTCCTCTGTGTCTGAGGTGGAGCAGGAACAAGAAGAGATCGCTAGGTGTTTGATGTTATTGTCCAAAGACTCCAGCCATAGGGGTCGTTTTGTTTTGCCCACTGAATCTTCGGATAACAATTCTGTCATTCTAGAGGCAAAATCACCGTCTGTGGATACGAGAATTGCTTTCAGCAATGGTAGAAAAAGCTCTGAGATTGTAGGGAAGAAAGAGGCGAAGCACGAGGATGTGAAGCTTAAGTCCACTGAGATTGTTGGTTCTGATAATTCAGATTCTGGGTATTTCAGATATGGTCCCAAGAAGTTAGATTCCGATGTTTCAATTGATGGGTTTCATGAATTTAAGACACCAAGAGACTGTGATACTGAATCGAGGAAAAATATGGTACTGAAGAACAGAGGAAGAACCAGAATCATTGAACCCAGAAAACTAGTTTTGGAGGATTTGGACTATGAGAATGACACAACAGATGGAGCCTCTGCTTCGAGGTATAAGTTCATCAATTCGAGAAAGAAGACGGGAAATGGACTTCCCAATGAGGGATCTTGGAAGCAAGAGAGCATGAACAGTGAGAAAGTGATGAGTGGTTCTTATGATTCAGCTTATGAGAGTGATGAAAGCAGCACAGACGCCGATGCTTATCCTGCTCCAAAGTCTCACAGCACCAAGGCCATGAATGGAAAGAAGACCAGCAAGTCCAAGAAGAAGTTGAAGTCAAAGAAAAGTAGAGACCATGAATGCCCAATCTGCTACAAGATCTTCAGAATGTCCGGAACTTCTGAGAATGTTTGTGTCATTTTCCCCTATGATGAAAGCAGTGGAAATGTACAGACAAATGGGAGGTCCTTTGGGAGGCATGATCATGATTATGATAAAGAAAGATTCTAG 1425 0.4421 MDERKFVCKYCNKKFPCGKSLGGHIRTHMTTDHSSQPQSNQLRTNAYDNRVIKFDGGKKRKRDFGSEEIASASENPIYGLRENPKKTTRFVHSNAERFCKECGKGFLSLKALCGHMACHSEKDKGTTMSKFENNSGFSEKQQKLVMDSQSDTETSAPRRSRRMRLKTLSSNANNNNPPSSSVSEVEQEQEEIARCLMLLSKDSSHRGRFVLPTESSDNNSVILEAKSPSVDTRIAFSNGRKSSEIVGKKEAKHEDVKLKSTEIVGSDNSDSGYFRYGPKKLDSDVSIDGFHEFKTPRDCDTESRKNMVLKNRGRTRIIEPRKLVLEDLDYENDTTDGASASRYKFINSRKKTGNGLPNEGSWKQESMNSEKVMSGSYDSAYESDESSTDADAYPAPKSHSTKAMNGKKTSKSKKKLKSKKSRDHECPICYKIFRMSGTSENVCVIFPYDESSGNVQTNGRSFGRHDHDYDKERF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2798 474 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 434 - -
Bisa01g2798 474 SMART c2h2final6 97 119 IPR013087 -
Bisa01g2798 474 SMART c2h2final6 6 28 IPR013087 -
Bisa01g2798 474 SUPERFAMILY beta-beta-alpha zinc fingers 4 119 IPR036236 -
Bisa01g2798 474 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Bisa01g2798 474 MobiDBLite consensus disorder prediction 454 474 - -
Bisa01g2798 474 MobiDBLite consensus disorder prediction 349 383 - -
Bisa01g2798 474 Pfam C2H2-type zinc finger 99 121 - -
Bisa01g2798 474 Pfam C2H2-type zinc finger 6 29 - -
Bisa01g2798 474 MobiDBLite consensus disorder prediction 166 186 - -
Bisa01g2798 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Bisa01g2798 474 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Bisa01g2798 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Bisa01g2798 474 Gene3D Classic Zinc Finger 1 64 - -
Bisa01g2798 474 MobiDBLite consensus disorder prediction 129 153 - -
Bisa01g2798 474 MobiDBLite consensus disorder prediction 404 419 - -
Bisa01g2798 474 MobiDBLite consensus disorder prediction 125 187 - -
Bisa01g2798 474 MobiDBLite consensus disorder prediction 349 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2798 Bisa-ChrBisa01 55938951 55940820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2798 3 434 C2H2 Transcription Factor Family AT1G26610 39.485 3.42e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa01g2798 zf-C2H2_6 5e-05 CL0361