Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2742 ATGGCTCTCTTCAATCTTCAACTTTCATTCTCTACTTTCTTCACTCTTGTTGCCTTCATTTCACTCTTCCAAGTGAACCCTTCCTCTTGCTCCCACCCTACAAAGCTTCTTAATTCTTCATACGCCTATGCTTCAGATTGGTCTCCAGCAGACGCCACGTGGTACGGAAGCCCCACTGGTCCTGGAACTGATGGGGGTGCTTGTGGATATGGCAATGCTGTAGAGCAACCTCCATTTTCTTCAATGGTATCAGCTGGAGGCTCAACTCTGTATAACTCAGGCAAAGGCTGTGGTACTTGTTATGAGGTGAAGTGCACAGGGAATTCTGCTTGTTCGGGTAACTCAGTGAATGTGGTTATCACTGATGAGTGCCCTGGGTGTGGTTCTTCTCAGAGAGGTCACTTTGATTTAAGTGGCACTGCTTTTGGTGCCATGGCGGTTTCCGGTCAGGCCGAGAAGCTGCGCAACGTTGGAAAGCTCGAGATTCAATATAGAAGAGTTGAATGTAAGTATCCAGGAACTTCAATGGCGTTTAAAGTGGACTCTGGATCCAATCTATACTATTTTGCTGTGGTGATAGAGTATGAGGATGGGGATGGTGATCTTGGCAACGTGGAACTGAAGGAAGCTCAGAAGTCATGGCGTAAAATGCAAAAGTCATGGGGTGCAGTTTGGAAGCTCAACGCTGCCTCGCCTCTTGGAGGTCCTTTGTCCATCAGGCTAACCTCCATCGAATCCCACAAAACTGCCGTCGCCAACAATGTGATTCCAGTGGGGTGGAAGCCTGGCGAAACTTATCGATCTGTCGTCAACTATAATTAA 822 0.4757 MALFNLQLSFSTFFTLVAFISLFQVNPSSCSHPTKLLNSSYAYASDWSPADATWYGSPTGPGTDGGACGYGNAVEQPPFSSMVSAGGSTLYNSGKGCGTCYEVKCTGNSACSGNSVNVVITDECPGCGSSQRGHFDLSGTAFGAMAVSGQAEKLRNVGKLEIQYRRVECKYPGTSMAFKVDSGSNLYYFAVVIEYEDGDGDLGNVELKEAQKSWRKMQKSWGAVWKLNAASPLGGPLSIRLTSIESHKTAVANNVIPVGWKPGETYRSVVNYN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2742 273 CDD DPBB_EXPB_N 47 169 - -
Bisa01g2742 273 Gene3D - 171 272 IPR036749 -
Bisa01g2742 273 Pfam Expansin C-terminal domain 177 257 IPR007117 -
Bisa01g2742 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 174 IPR007112 -
Bisa01g2742 273 PANTHER EXPANSIN-B3 23 271 - -
Bisa01g2742 273 SMART dpbb_1 83 164 IPR007112 -
Bisa01g2742 273 Pfam Lytic transglycolase 84 162 IPR009009 -
Bisa01g2742 273 Gene3D - 31 170 IPR036908 -
Bisa01g2742 273 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Bisa01g2742 273 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576|GO:0019953
Bisa01g2742 273 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Bisa01g2742 273 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576|GO:0019953
Bisa01g2742 273 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Bisa01g2742 273 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Bisa01g2742 273 SUPERFAMILY PHL pollen allergen 175 268 IPR036749 -
Bisa01g2742 273 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Bisa01g2742 273 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Bisa01g2742 273 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Bisa01g2742 273 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Bisa01g2742 273 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Bisa01g2742 273 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Bisa01g2742 273 SUPERFAMILY Barwin-like endoglucanases 37 173 IPR036908 -
Bisa01g2742 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 268 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2742 Bisa-ChrBisa01 54477761 54481015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2742 26 272 Expansin Gene Family AT1G65680 60.800 1.81e-108 313