LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g2640	ATGGATGCAAGTAGTTGCACAGATGAAAGCACCACGAGTGATTCAGTGTCAATATTAGTTTCTCCGGCGACGACTATGTTGCCGTACACCGTGGCATCCCAGAAGCTGTCGCCGCCGCCGAACAGTCTCTGCCGTGTCGGCAGCGGCGCAAGCACCATCGTGGACTCCGAGGGAAGCTTGGAGGCGGAGTCCCGGAAGCTGCCGTCGTCGAAGTACAAGGGAGTGGTGCCCCAACCCAATGGACGGTGGGGGGCGCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGGGCCTACGACATCGCAGCCCAGAGGTTCCGCGGCAAGGACGCCGTCACCAACTTCAAGCCCCTAGCCTCCTCCGGCGCCGGTGACTCCGCAGCCTCCGACGACGATGATATCGAAGCGGCGTTCCTCCACTCGCATTCCAAGGCCGAGATCGTCGACATGCTGAGGAAGCACACCTACAAGGACGAGCTCGAGCAGAGCAAGCGCAACCGCGGATTGGGGGGAGGAAATTACAGGAAGTCGCTGAAGGACGAAGGGGCAGGCGCGTGCTACGATCGCTCACAGAACGCGCGTGAGCAGCTGTTTGAGAAAACCGTTACGCCGAGCGACGTGGGAAAGCTGAATCGATTGGTTATTCCGAAACAACACGCGGAAAAGCACTTCCCGTTGCAGAGCGGAGGCACTTCCTGTACGACAACTGCGGCCGACGCCGCCGCAGCCAAGGGGGTACTTTTGAATTTCGAAGACATTGGAGGGAAAGTGTGGAGGTTTCGGTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTAACCAAAGGCTGGAGCCGGTTCGTGAAGGAGAAGAACCTGAAAGCCGGCGATGCGGTTAGTTTCTACAGGTCGACCGGACCGGACCGGCAGCTCTACATTGACTGGAAAACCCGAAATAACCAGATCGGCGGCGGCGGTGACGAGGTTGGAATTGGGGGATTGTACAACCCGGTCGGACCGGTGGTGGAGACGGTTCAGATGGTTCGACTATTTGGAGTCAACATTTTGAAAATACCTGGTTCTGATGCTAATGTTGGTGGGTGCTGCAATGGGAAGAGGAAAGAGATGGAGCAGTTTACGTTAGACTTTAGTAAGAAGCCGAAGGTAATCGGAGCTTTGTAA	1191	0.5684	MDASSCTDESTTSDSVSILVSPATTMLPYTVASQKLSPPPNSLCRVGSGASTIVDSEGSLEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLASSGAGDSAASDDDDIEAAFLHSHSKAEIVDMLRKHTYKDELEQSKRNRGLGGGNYRKSLKDEGAGACYDRSQNAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQSGGTSCTTTAADAAAAKGVLLNFEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDAVSFYRSTGPDRQLYIDWKTRNNQIGGGGDEVGIGGLYNPVGPVVETVQMVRLFGVNILKIPGSDANVGGCCNGKRKEMEQFTLDFSKKPKVIGAL	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g2640	396	Pfam	AP2 domain	70	118	IPR001471	GO:0003700\|GO:0006355
	Bisa01g2640	396	SUPERFAMILY	DNA-binding domain	70	126	IPR016177	GO:0003677
	Bisa01g2640	396	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	66	370	IPR044800	GO:0003700
	Bisa01g2640	396	CDD	B3_DNA	207	307	IPR003340	GO:0003677
	Bisa01g2640	396	ProSiteProfiles	B3 DNA-binding domain profile.	208	322	IPR003340	GO:0003677
	Bisa01g2640	396	ProSiteProfiles	AP2/ERF domain profile.	71	126	IPR001471	GO:0003700\|GO:0006355
	Bisa01g2640	396	Gene3D	-	196	328	IPR015300	-
	Bisa01g2640	396	SUPERFAMILY	DNA-binding pseudobarrel domain	206	320	IPR015300	-
	Bisa01g2640	396	FunFam	AP2 domain-containing protein RAP2.8	70	127	-	-
	Bisa01g2640	396	Pfam	B3 DNA binding domain	208	319	IPR003340	GO:0003677
	Bisa01g2640	396	SMART	rav1_2	71	132	IPR001471	GO:0003700\|GO:0006355
	Bisa01g2640	396	CDD	AP2	70	125	IPR001471	GO:0003700\|GO:0006355
	Bisa01g2640	396	Gene3D	AP2/ERF domain	70	127	IPR036955	GO:0003700\|GO:0006355
	Bisa01g2640	396	SMART	B3_2	208	322	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g2640	Bisa-ChrBisa01	51401663	51402853	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g2640	1	396	B3 DNA Binding Superfamily	AT1G25560	58.809	3.95e-142	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-RAV	Bisa01g2640		B3	7.3e-28	CL0405