LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g2562	ATGATACTCTTCTCATTTGGGAAGGCTTCAGGAGTTGTTAAGAATGATCTAAAGTCTGAGATGAAATTCAATCTAAATACTCCAACAGAAAAGCGAAACGAAATTGCTTTCTTGGCTTTTCCCTTTACTCCCGCAGAGAAGCCAGACTGTGGTTTAATACACATAACAGGTTGTTATGATCCAAACCCGATCAACCATGCTCAATTCGGAAACCAAAGCCGGCTGATTACATGGATCACCCCTCCGGAGGATGACCAACCCAATACATTCACCTTTGGAGCTCAAGACCTTGAGTTTGAAAAGCTCTTGTTGTCTAAAAGCTGCAAGACCTTCGATCATAGCCGCGCTATACCTTCGTTGTCTCCTATGTTGTCTTTCCAGATCTCCAAAGCTTACCCTCGTACAGGTGTATCTATTGGAAGCGCAATGGCTATTACAATTGGCTTGTTTGTTATTATAGTGCTGAACAAACGAAGATACAAGTCTACCGGCGTACAAAATCAATCAAGAAACATTAATTCTGATAAATACTTGAGTGAAAATACAGAAAGTAGACTTATCTACTTCGGGGTCCCTGTTTTCACCTATGAGCAGCTTCAAGAAGCAACAAACAACTTTGATCGATCTAGAGAACTTGGAAATGGAGGATTTGGGACTGTCTATTACGGAAAGCTTCATGATGGCCGGGAAGTTGCTGTCAAGTGCCTATATGAGCGCAATTATAGGCGTGTAGAACAGTTCAAAAATGAAATTAAGATCCTCACATGTTTGCGCCACAGAAACCTTGTGTCTCTTTATGGATGCAGTTCACGTCATAGCCGTGAGCTAATGCTAGTCTATGAATACATTCCCAATGGTACTCTTGGTTGCCATCTTCATGGCAATCTAGCAAAGCCTGGCTCACTGTCATGGCCGGTAAGAATGAGAATTGCTGTAGAGACAGCAAGTGCATTGTCTTATCTCCATGCTTGTGAAATCATTCACCGCGATGTCAAAAGCAGCAACCTTCTACTTGACAACAATTTTTGTGTTAAGGTTGCAGACTTCGGTCTTTCAAGGTTGTTCCCCTACTTTGTCTCCCATGTCTCCACAACTCCACAAGGAACCCCAGGATATTTGGATCCAGAATATCACCAGTGCTACCAGCTTACTCACAAGAGCGATGTGTATAGTTTTGGGGTTGTGCTCATTGAGCTAATATCTTCTATGCCTGCAATTGATGTCACAAGGAATAAGGAGGAGATTAAGTTGGTAAACCTAGCAGTAGAGAAGATTAAAAGGAGGGCTTTTACTGAGCTGGTAGATCCCTCCCTTGGTTTTGAGTTAGATGATGAGATTAAGAGGATGATAGTGTCAGTGGCAGAATTGGCTTTTAGGTGTTTGCAGAGGGACAAGGAACTTAGACCTTCCATGGATGATGTTCTGGAGGTTCTGCAGAAAATTGAAAGTGGGAAGGATGAGCCTGGGCATCTTGAGCTCCAGGGTGCTGGGATTTCAGACAGGGAGATACATATATCTCTACCAACTTCTCTGGATAGGGACGGGGTTGGATCAAAGACGAATTTGAAGCCACAGCGCCTTAACCAAACACTCTGA	1596	0.4305	MILFSFGKASGVVKNDLKSEMKFNLNTPTEKRNEIAFLAFPFTPAEKPDCGLIHITGCYDPNPINHAQFGNQSRLITWITPPEDDQPNTFTFGAQDLEFEKLLLSKSCKTFDHSRAIPSLSPMLSFQISKAYPRTGVSIGSAMAITIGLFVIIVLNKRRYKSTGVQNQSRNINSDKYLSENTESRLIYFGVPVFTYEQLQEATNNFDRSRELGNGGFGTVYYGKLHDGREVAVKCLYERNYRRVEQFKNEIKILTCLRHRNLVSLYGCSSRHSRELMLVYEYIPNGTLGCHLHGNLAKPGSLSWPVRMRIAVETASALSYLHACEIIHRDVKSSNLLLDNNFCVKVADFGLSRLFPYFVSHVSTTPQGTPGYLDPEYHQCYQLTHKSDVYSFGVVLIELISSMPAIDVTRNKEEIKLVNLAVEKIKRRAFTELVDPSLGFELDDEIKRMIVSVAELAFRCLQRDKELRPSMDDVLEVLQKIESGKDEPGHLELQGAGISDREIHISLPTSLDRDGVGSKTNLKPQRLNQTL	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g2562	531	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	326	338	IPR008271	GO:0004672\|GO:0006468
	Bisa01g2562	531	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	182	282	-	-
	Bisa01g2562	531	CDD	STKc_IRAK	212	481	-	-
	Bisa01g2562	531	SMART	serkin_6	206	478	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g2562	531	Pfam	Protein kinase domain	207	476	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g2562	531	FunFam	Wall-associated receptor kinase-like 20	283	490	-	-
	Bisa01g2562	531	ProSiteProfiles	Protein kinase domain profile.	206	493	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g2562	531	ProSitePatterns	Protein kinases ATP-binding region signature.	212	234	IPR017441	GO:0005524
	Bisa01g2562	531	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	109	487	IPR044652	GO:0004672
	Bisa01g2562	531	SUPERFAMILY	Protein kinase-like (PK-like)	190	481	IPR011009	-
	Bisa01g2562	531	Gene3D	Transferase(Phosphotransferase) domain 1	283	488	-	-
	Bisa01g2562	531	Gene3D	Phosphorylase Kinase; domain 1	177	282	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g2562	Bisa-ChrBisa01	49311966	49318124	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g2562	134	483	Receptor kinase-like Gene Family	AT1G25390	57.670	9.75e-140	416

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Bisa01g2562		Pkinase	7.3e-47	CL0016