Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2547 ATGGAAGAATCGATCAGTTCCGTTCCTATTTTCGCTCAAGGCCTTAAGATTCTGCTGGTTCATAGTGACACTTTGTCAATCGTCAACCTTTCATCTATGCTTGAGAAATACACATTCAAAGTTACAGTCACTGAAGAAGCAAAAGCTGCAATGGCCATGATTTGTCAACAAGAAGGCCAGTTCAACCTAGTAATGGCTAAAGCCAACATGCCTGACATGGACATCCTTTCTTTTCTTCACTCCCTAATTGAAAAAGACATCCCTGTGATCTTTATCTCATCTGGAGAGTACCATGATGTAACTTGGAAAGCACTGGTAAAAGGATCATGTTACTTCCTTGAGGAACCGATACTTCTAGAAGATCTCAAGTATGTGTGGCAACATGTGTATTTCACAAAATTCAACTCAGCCAAGAAAACCCAGAATGCAGAGTGTGTAAACAAGGTTCGTGGAGTTCATGAAGACAGAAGATGCATGCAGAAAGAGAAGAGAAAAAAGTTTCGGATGCAGTTTGACAGCAACCACATAACTGCTGCTATGGCGGTGGCAGAGGAAACAATAAGACAACCTAAGTACCATGAATCTGCTGAGAAGTCACGCATTGTTTGGACTCCTGAGCTGCATCAGAAGTTCTTAGATGCCCTCAGTTCTCTAGGGGACACGAATAACATTCGTCCTAAAGCGATACTAGAACTGATGAATGTGCCTAACCTCACGGCTCGCCAAGTTTCAAGTCATCTTCAGATCAGCAATGTTGTTCCTATACAGAAATACAAAACTGAAGCACAAATATACCTCAGTGGTAGATTCCAGTGTCCTTCACCATTTCAGAACCAGGGTTGTGCAGGCATAGTAGTTCCGGGATGTGTATGCGGTAATTCGACAGCTGAATTTACTCCAAATTTCCCTGCATCATCTTCTTCCCTGAAAGAGATCCAGAGTCAGAATCAGTTCCCAGTGAACTTCAATGAAACTCAGGAGCCAGAAATGCTTCCATATGAACTTCCAATAGCATTGGCCAATTATGGAAGCCAAAACCTTGGAGCTGTAGGGGGACAACATATGCAAGATGCTTCCATGCATATGCAAGATGCTTCCATGGATCAAAACCAACCCATCACAACATTTGATGCCATACAAATGCTTGAGGAAGACTGTGATCAGTATGACCATTATGGAAATGGAGTAGTTCCTGATCAAGTTGATGAATACAGTGAAATGCTAAGGAACGTACTCCTTGGAGATGGCCTTAGTTCACAAGAACCTGATATGTGA 1275 0.4227 MEESISSVPIFAQGLKILLVHSDTLSIVNLSSMLEKYTFKVTVTEEAKAAMAMICQQEGQFNLVMAKANMPDMDILSFLHSLIEKDIPVIFISSGEYHDVTWKALVKGSCYFLEEPILLEDLKYVWQHVYFTKFNSAKKTQNAECVNKVRGVHEDRRCMQKEKRKKFRMQFDSNHITAAMAVAEETIRQPKYHESAEKSRIVWTPELHQKFLDALSSLGDTNNIRPKAILELMNVPNLTARQVSSHLQISNVVPIQKYKTEAQIYLSGRFQCPSPFQNQGCAGIVVPGCVCGNSTAEFTPNFPASSSSLKEIQSQNQFPVNFNETQEPEMLPYELPIALANYGSQNLGAVGGQHMQDASMHMQDASMDQNQPITTFDAIQMLEEDCDQYDHYGNGVVPDQVDEYSEMLRNVLLGDGLSSQEPDM 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2547 424 Gene3D - 15 164 - -
Bisa01g2547 424 SUPERFAMILY CheY-like 13 130 IPR011006 -
Bisa01g2547 424 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 249 IPR006447 GO:0003677
Bisa01g2547 424 SMART REC_2 15 126 IPR001789 GO:0000160
Bisa01g2547 424 Pfam Response regulator receiver domain 17 122 IPR001789 GO:0000160
Bisa01g2547 424 ProSiteProfiles Response regulatory domain profile. 16 130 IPR001789 GO:0000160
Bisa01g2547 424 Pfam Myb-like DNA-binding domain 203 248 IPR001005 -
Bisa01g2547 424 CDD REC_typeB_ARR-like 17 130 - -
Bisa01g2547 424 PANTHER - 9 253 - -
Bisa01g2547 424 Gene3D - 195 263 - -
Bisa01g2547 424 SUPERFAMILY Homeodomain-like 197 248 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2547 Bisa-ChrBisa01 48834135 48839377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2547 8 248 Response Regulator Gene Family AT1G68210 33.582 3.42e-35 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Bisa01g2547 Response_reg 6.6e-09 CL0304