Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2541 ATGCAAAATAAGGACGCTTCCTCTCCCGATTCCAATGGCGGCCTTGGCGCTAAGACTACCACCATCACCACCACCGGCCAGATGGCAACAAACGGCGCCTCATTTGATTATATCAACTCTACTTTATTCACTGATGACAAGTCACTCCTCTCAGCCAGCATTGGCGACTTGGGGATTCAGAACAACCTGTACAAATCTTGCCTCGTGCAGAAACACCAGGATACGGTGAACCGCTACAGTATGTGCTTCGCTCGCCTCGTTGAAATGTCGAAAGACATCGAAGCTCTGCGGCAAGAGAACTCTCAACTTCGAGCTGCTAATATTGAGCTGCAAAAGCAGTTGGACCTCATTCTGGCTTCACTCCACAGCCAATTCGACGGTTCCTCTGGCCACATGACGCCGTTTGATATGGTGAATCTGAATGCAATTAATGGGTTCCACACTGGGCACAACTGCTGGTATGGGAAAGAGAACTGCCCTAATAACCAGGAAGTTTTGGATGGGAGTCCAACTAGCGTGACTGAGAACAACTCTGCTATTCCAGTGGAGAGGTTCTCGCTGCCGAAAAGCATATCGGTGAGGTCCAATGGGTACTTGAAAATGGCTCAGTCTGCGACGTCTGGGAGCAATGGCAGTCGCACTAAGGGCCCTGCTCGCCCACGGTCGTCCCCAACTCCGCCCGATGTCATTTGCATGAATGCCTTCTGGGCTATAAAGGTTCTTAGAGTGGGTTCCTTGTCCTGCCGAGTTGAATTAATTCTGGATATGCCAATGATACAGCAAAAGGTATATGTGCGCGGAGGGAAGGAGGAAGAGCCTCTTGAGATGGTGGTGTACAACCAAGGCATGTTCAAGACTGAGCTGTGCAACAAATGGCAGGAGACTGGCACATGCCCTTATGGAGATCATTGCCAATATGCTCACGGCATTGAGGAGCTCCGCCCAGTCATCCGCCACCCACGTTACAAAACTCAGGTCTGTAGGATGGTCTTTGCTGGCGTTGTATGCCCATATGGCCACAGATGCCATTTTCGCCATGCACTCACTGAACAAGAGGCAGCTCAAGTACAGCCTAAACCCAGGGCAATGAAACTGGAAAGATAA 1104 0.5045 MQNKDASSPDSNGGLGAKTTTITTTGQMATNGASFDYINSTLFTDDKSLLSASIGDLGIQNNLYKSCLVQKHQDTVNRYSMCFARLVEMSKDIEALRQENSQLRAANIELQKQLDLILASLHSQFDGSSGHMTPFDMVNLNAINGFHTGHNCWYGKENCPNNQEVLDGSPTSVTENNSAIPVERFSLPKSISVRSNGYLKMAQSATSGSNGSRTKGPARPRSSPTPPDVICMNAFWAIKVLRVGSLSCRVELILDMPMIQQKVYVRGGKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQYAHGIEELRPVIRHPRYKTQVCRMVFAGVVCPYGHRCHFRHALTEQEAAQVQPKPRAMKLER 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2541 367 SUPERFAMILY CCCH zinc finger 320 351 IPR036855 GO:0046872
Bisa01g2541 367 ProSiteProfiles Zinc finger C3H1-type profile. 321 349 IPR000571 GO:0046872
Bisa01g2541 367 SMART c3hfinal6 321 348 IPR000571 GO:0046872
Bisa01g2541 367 SMART c3hfinal6 283 310 IPR000571 GO:0046872
Bisa01g2541 367 MobiDBLite consensus disorder prediction 202 219 - -
Bisa01g2541 367 Gene3D - 317 353 - -
Bisa01g2541 367 Gene3D - 278 316 - -
Bisa01g2541 367 SUPERFAMILY CCCH zinc finger 280 315 IPR036855 GO:0046872
Bisa01g2541 367 FunFam Zinc finger protein 36, C3H1 type-like 1 317 353 - -
Bisa01g2541 367 ProSiteProfiles Zinc finger C3H1-type profile. 283 311 IPR000571 GO:0046872
Bisa01g2541 367 PANTHER CCCH ZINC FINGER/TIS11-RELATED 78 355 IPR045877 GO:0003729
Bisa01g2541 367 FunFam zinc finger CCCH domain-containing protein 15-like 277 316 - -
Bisa01g2541 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 309 IPR000571 GO:0046872
Bisa01g2541 367 Coils Coil 86 116 - -
Bisa01g2541 367 MobiDBLite consensus disorder prediction 202 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2541 Bisa-ChrBisa01 48750168 48751806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2541 61 359 C3H Transcription Factor Family AT1G68200 47.896 8.24e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa01g2541 zf-CCCH 1.2e-11 CL0537