Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2474 ATGGCGGGCTTAGTCGCCGGCGCCGTTGCCGGAGACCGCATACCGGAGCTCCTTGGCTTAGTTCATGACATTGTTGGAATGTGCGGCGGAGCTGGAGGGTCCTCCTCCGCTGCCGCCATTTATGGCGATGCTGTGTTCAAGAAGGACTGCACCGATCTGGTTCGTCGGATCTCCCTCCTCACGCATTTGTTCGAGGAGATTAGGGACTCGAGGAAGGCCGTCGTTGATTCTGGAAGCTTGGATGGTTGCTCTTCGTCCACCGGCTCGGCATCTTCCTGGTCCTCTGATCTGGTGCTTGCTCTCCTCTCTGCTAAGCGCCTTCTTTCCGTCGCAAGGAACTTCCGTTCTAATTGCACCTATGATGGAGCTGCCAAGACAGTTGTATTCCAATTTCAGTGCGTGACATGGAAATTGGAAAACCTATTAAGCATCCTCCCCTATGACCATTTGGACGTATCAGAGGAAGTCAGGGAACAGGTGGAGTTAGTGAGGTCACAATTGAGACGAGCCTGTGAAAAATATGGATCTATGATCTCAAAGCTTTCATCTTATGATTTATCTCAGCCACAAGCTCAAGAAGTTAGTCGGGTTGTTGGCAGATCTGTGAATGGACTGCATAGACAAAATAGCTGTCCTGATTATTTGTCAGAAGTAGAAAGCATTCGTAGAAGCAATGGATGGAAAAGTTTCAGTACGAATCAGGGAAGTCCTTGTTTGGGAAGGTCACAGAGCATTTCTGCATCTTCTGAGATTTCCTTATCAAATATCATTGATTCTGAAAGTCAAGAAAATTCTGTGAAGAAGAGTCTGACTGAAGATAAAAAGCCTGAAACAACTGGAATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAGCTAATGAGGGATCCTGTTATTGTCGCCACGGGTCAGACATATGAGAGATCTTACATCCAGAGATGGATAGATGGAGGAAATACAACATGTCCAAAAACTCAGCAGAAGCTCCAAAATTTGACACTTACCCCAAATTATGTGTTAAGGAGCCTTATAACCCAGTGGTGTATGGAGCACAACATCGAGCAGCCAACAGGACTAACAAATGGCAAAATAAAAAAGAGTGATGGATCATTCAGAGATGTTACGGGTGACATAGAAGCCATTGGAGCTCTGGTCCGGAAGCTCTCCAGCCAGGCCATTGAGGAGCGTAGAGCAGCTGTTGCTGAAATTCGGTCACTTTCCAAACGAAGCACAGACAACAGGATACTAATTACTGAAGCAGGAGCTATTCCGGTTCTCGTTAACCTATTAACATCAGAAGATGTATTGACTCAAGAAAATGCAGTTACTTCCATTCTTAACCTCTCTATATATGAGAACAACAAAGGACTTATAATGCTTGCTGGTGCCATCCCATCCATTGTTCAAATCCTTAGAGCTGGAAGCATGGAAGCAAGAGAAAACGCGGCAGCAACCCTCTTTAGCTTGTCGCTTGCAGATGAGAACAAAATAATAATTGGTGCCTCAGGTGCTATCCCTGCTTTGGTAGAATTGCTCCAAAATGGGAGCCCTAGAGGGAAGAAGGACGCAGCAACAGCATTATTCAACTTATGCATATATCAAGGGAACAAGGGTAGGGCCATAAGAGCAGGAATCATTACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAGTCAATGGTTGACGAAGCCCTGACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGATTGCTATTGTAAAGGCGAGCACTGTACCTGTTCTGATTGATCTTTTGAGGACAGGACTTCCTCGAAACAAAGAGAATGCAGCTGCCATTTTACTTGCCCTGTGTAAGAGAGATACCGAAAATCTAGCCTGTATAAGTAGACTTGGTGCTATCATACCATTGACTGAACTTGCTCGGAGTGGCACAGAGAGGGCTAAAAGGAAGGCTACTTCATTATTGGAGCATCTTCGGAAGTTACAGCATCTTTGA 1983 0.4534 MAGLVAGAVAGDRIPELLGLVHDIVGMCGGAGGSSSAAAIYGDAVFKKDCTDLVRRISLLTHLFEEIRDSRKAVVDSGSLDGCSSSTGSASSWSSDLVLALLSAKRLLSVARNFRSNCTYDGAAKTVVFQFQCVTWKLENLLSILPYDHLDVSEEVREQVELVRSQLRRACEKYGSMISKLSSYDLSQPQAQEVSRVVGRSVNGLHRQNSCPDYLSEVESIRRSNGWKSFSTNQGSPCLGRSQSISASSEISLSNIIDSESQENSVKKSLTEDKKPETTGIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQKLQNLTLTPNYVLRSLITQWCMEHNIEQPTGLTNGKIKKSDGSFRDVTGDIEAIGALVRKLSSQAIEERRAAVAEIRSLSKRSTDNRILITEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKIAIVKASTVPVLIDLLRTGLPRNKENAAAILLALCKRDTENLACISRLGAIIPLTELARSGTERAKRKATSLLEHLRKLQHL 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2474 660 Pfam Armadillo/beta-catenin-like repeat 411 449 IPR000225 GO:0005515
Bisa01g2474 660 Pfam Armadillo/beta-catenin-like repeat 493 531 IPR000225 GO:0005515
Bisa01g2474 660 SUPERFAMILY RING/U-box 270 355 - -
Bisa01g2474 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 359 IPR013083 -
Bisa01g2474 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 503 545 IPR000225 GO:0005515
Bisa01g2474 660 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Bisa01g2474 660 MobiDBLite consensus disorder prediction 262 281 - -
Bisa01g2474 660 FunFam RING-type E3 ubiquitin transferase 560 659 - -
Bisa01g2474 660 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
Bisa01g2474 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Bisa01g2474 660 FunFam RING-type E3 ubiquitin transferase 280 355 - -
Bisa01g2474 660 PANTHER U BOX DOMAIN-CONTAINING 47 655 - -
Bisa01g2474 660 CDD RING-Ubox_PUB 282 334 IPR045210 -
Bisa01g2474 660 SUPERFAMILY ARM repeat 379 654 IPR016024 -
Bisa01g2474 660 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Bisa01g2474 660 Gene3D - 561 659 IPR011989 -
Bisa01g2474 660 MobiDBLite consensus disorder prediction 265 280 - -
Bisa01g2474 660 FunFam RING-type E3 ubiquitin transferase 359 559 - -
Bisa01g2474 660 Gene3D - 456 560 IPR011989 -
Bisa01g2474 660 Gene3D - 360 455 IPR011989 -
Bisa01g2474 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 504 IPR000225 GO:0005515
Bisa01g2474 660 SMART arm_5 574 614 IPR000225 GO:0005515
Bisa01g2474 660 SMART arm_5 533 573 IPR000225 GO:0005515
Bisa01g2474 660 SMART arm_5 451 491 IPR000225 GO:0005515
Bisa01g2474 660 SMART arm_5 410 450 IPR000225 GO:0005515
Bisa01g2474 660 SMART arm_5 492 532 IPR000225 GO:0005515
Bisa01g2474 660 SMART arm_5 616 656 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2474 Bisa-ChrBisa01 46839349 46842204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2474 17 656 U-box Gene Family AT1G23030 62.150 0.0 734