Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa01g2460 | ATGGCGGTTATACCTCGAAGCTCTTCCAGTCTGGAATTGACCATATCTGTCCCTGGCTTTGCTTCTTCTCCTCCTCTTCCTTTATCTGTGAGAGAGTTAGACATAAACCAAGTACCCTCAGAAGAAGAATGGATGATGACAATGGAAGACGAAGACGAAAGCAGCAACGGAGGAGGCCATCCTCGCAAGAAGCTCCGTCTCACTAAGGAACAGTCTCGTCTTCTTGAACACACCTTCACTCAAAACCACACCCTCAACCCAAAGCAGAAGGAGGCATTGGCAATGCAGTTGAATCTTAGACCGAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGAAGCAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACTTGAAGCGGTGGTTCGGGTCGCTGACGGAGCAGAACCGGCGGCTGCACCGGGAGGTGGAGGAGCTGAGGGCCATGAAGGTGGGTCCCCCCACTGTGCTTTCCCCTCACACCTGTGAGCCACTTCCGGCGTCAACCCTCACCATGTGTCCCCGCTGCGAGAGGGTTACCACCACCTCCACTGTTGCCGCCGCGGCCGACAAGGACCCCGCCGGTGGGCCCGCCTTGTCGTCCAAAAGGGAGACGCCCACCCTGCACTCTCATTACCCTAAGTCGGCGGCTTGTTTCCCTGTGTCTTCTTCTTCCAATGTATAA | 690 | 0.5565 | MAVIPRSSSSLELTISVPGFASSPPLPLSVRELDINQVPSEEEWMMTMEDEDESSNGGGHPRKKLRLTKEQSRLLEHTFTQNHTLNPKQKEALAMQLNLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLHREVEELRAMKVGPPTVLSPHTCEPLPASTLTMCPRCERVTTTSTVAAAADKDPAGGPALSSKRETPTLHSHYPKSAACFPVSSSSNV | 229 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa01g2460 | 229 | Gene3D | - | 46 | 123 | - | - | |
| Bisa01g2460 | 229 | Pfam | Homeodomain | 62 | 116 | IPR001356 | GO:0003677 | |
| Bisa01g2460 | 229 | SUPERFAMILY | Homeodomain-like | 47 | 119 | IPR009057 | - | |
| Bisa01g2460 | 229 | MobiDBLite | consensus disorder prediction | 189 | 215 | - | - | |
| Bisa01g2460 | 229 | Coils | Coil | 131 | 151 | - | - | |
| Bisa01g2460 | 229 | FunFam | Homeobox-leucine zipper protein 18 | 46 | 123 | - | - | |
| Bisa01g2460 | 229 | SMART | halz | 118 | 161 | IPR003106 | GO:0006355|GO:0043565 | |
| Bisa01g2460 | 229 | ProSitePatterns | 'Homeobox' domain signature. | 93 | 116 | IPR017970 | GO:0000981|GO:0006355 | |
| Bisa01g2460 | 229 | CDD | homeodomain | 61 | 119 | IPR001356 | GO:0003677 | |
| Bisa01g2460 | 229 | SMART | HOX_1 | 60 | 122 | IPR001356 | GO:0003677 | |
| Bisa01g2460 | 229 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 48 | 193 | - | - | |
| Bisa01g2460 | 229 | ProSiteProfiles | 'Homeobox' domain profile. | 58 | 118 | IPR001356 | GO:0003677 | |
| Bisa01g2460 | 229 | Pfam | Homeobox associated leucine zipper | 118 | 152 | IPR003106 | GO:0006355|GO:0043565 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa01g2460 | Bisa-ChrBisa01 | 46487084 | 46490869 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa01g2460 | 30 | 182 | Homeobox Transcription Factor Family | AT1G70920 | 64.557 | 2.01e-61 | 188 |
Transcription factors information