Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2347 ATGACTGCTTTGCAGAGAGTGACACAGTCGAGCATGACCACTAGTGTAGGCAGCTACGGCACCTGCAAAGGCGGTGGTGCTGCTGCTATTGAGAAGGCGGTTCCTGAAAAATTCCCTGCTGGTCTGAGGGTTCTCGTTGTGGACGACGACCTCACTACCTTGAGAGTCATTGAACAAATGTCTCTCAGGTGTCATTATCGCGTTACCACATGTTCAGAGGCTACTGTTGCTTTGAATCTTCTTAGAGAGAGAAAAGGCTGTTTTGATGTTGTATTGAGTGATGTTCATATGCCGGATATGGATGGCTATAAACTCCTAGAACATGTTGGGCTGGAGATGGATCTTCCTGTTATTATGATGTCTGCTGATGGTAGAACAAGTGCTGTGATGAAGGGAATTAGACATGGAGCTTGTGACTATTTGATTAAGCCTGTCCGTGAGGAAGAACTGAGGAACATATGGCAGCATGTTGTTAGGAAAATGTGGAATGAAAATAAAGAACATGAAAATTCTGGCAGCTTGGAAGATAATGATAGGAGTAGACGAGGAAATGACGATGCTGAATATGCTTCATCTGTAATTGATACAGCAGAAGGAGTAGTTAAAGTGCCAAAGAAGAGGAATAATTCAAAAGAAGATGATGATGGTGAACTGGAGAATGACGATCCATCCACGTCAAAGAAGCCCCGTGTAGTCTGGTCAGTAGAGCTGCATCAACAATTTGTCAGTGCTGTGAACCAACTCGGGCTTGACAAGGCCGTACCAAAGAGAATCCTTGAATTGATGAATGTCCCTGGTTTAACAAGAGAAAATGTTGCGAGTCATCTGCAGAAATTTAGGCTTTATTTGAAGAGAATTAGTGGAGTAGCACACCAACAGAATGGGATGCCAAATACAGTTTCTGGGTCTATGGAATCCAAGCTAGGGGGACTTGGAAGATTAGACATCCAAGCTCTGGCTGCTGCGGGCCAAGTTCCTCCACAAACACTGGCGGCCCTTCATGCAGAACTCTTAGGTCGTCCAGCCACTAACTTAGTACCCACAGTGGACCAGACTTCTATTCTGCAAGCATCCATACAGGGGCCCAAGCATTCCCCTGCAGAACATGCTGTGGCATATGGTCAGCCTCTTGTAAAATGTCCTTCTAACATTGCCAAGAACTTTCCTCAGTCCATCCTAACTGTAGATGATGGGTCTTCAGGATACGGAGCGTGGCCGCCATCTGATACAATTGGTTCAATGGGACCAAATAATAATCTTGGAGGGGTGAGTGTTCAGAATAATAACATGCTGATGGACATACTGCAGCACCAGCAAAGGCAGCAGTACCAGCAAACCCAACAGCATAAGCCACAGCAGCAATCGCTGATGCTTGATCAAAGTCGTCCAATCAATGTTCAACCATCTTGTTTGGTGGTTCCCTCTCAATCTTCAAGCACTTTCCAGGCTAATAGTCCTTCTGTCAACCAGAACTGCAGTTTTGCTCGGAATGCCCTTATTGATTGTAGTCTCTTAGCTCCTCAATCGATTCATTCTTCAATAAATATTGCTCAATTTCCTGGTGGGGACGCCAAAGCTAAAGGTGTTCTATGTGGATATATGGCTCCAGGCTCCATTTCACCTTCAATAAGTGCTAACAATAGCAATGTTCAGCAGCTTCACAACTCAACTTTGACATTTGGTGCTGCAAGACCTTTGCCAACTCTTGCATCAAATGTCTCTGATACACAAGTTTCCCAAGTTGGTATCAAATCTGGTGATGCATTTGATCAAGCAACTGCTAGGAGTCTTGGATTTGTTGGCCAAGGTGCTAGCATTCCAAGTAGGTTTGCTGCTCATGAAATTGAATCATCTGTAAGTGACTTTAGTCAGGGAAAAACCTCTGTAGATAGCAATGGTAACACAGTAAAGGAGGAGCCAAATATGGATTTTATAGATAATCCAAAAGTGGGCGTCCCAATCTTACATAGATATACATCTCGTGATCCTATGAATGTGCTCACTGAATAG 2010 0.4418 MTALQRVTQSSMTTSVGSYGTCKGGGAAAIEKAVPEKFPAGLRVLVVDDDLTTLRVIEQMSLRCHYRVTTCSEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKMWNENKEHENSGSLEDNDRSRRGNDDAEYASSVIDTAEGVVKVPKKRNNSKEDDDGELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAHQQNGMPNTVSGSMESKLGGLGRLDIQALAAAGQVPPQTLAALHAELLGRPATNLVPTVDQTSILQASIQGPKHSPAEHAVAYGQPLVKCPSNIAKNFPQSILTVDDGSSGYGAWPPSDTIGSMGPNNNLGGVSVQNNNMLMDILQHQQRQQYQQTQQHKPQQQSLMLDQSRPINVQPSCLVVPSQSSSTFQANSPSVNQNCSFARNALIDCSLLAPQSIHSSINIAQFPGGDAKAKGVLCGYMAPGSISPSISANNSNVQQLHNSTLTFGAARPLPTLASNVSDTQVSQVGIKSGDAFDQATARSLGFVGQGASIPSRFAAHEIESSVSDFSQGKTSVDSNGNTVKEEPNMDFIDNPKVGVPILHRYTSRDPMNVLTE 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2347 669 Gene3D - 229 287 - -
Bisa01g2347 669 FunFam Two-component response regulator 224 287 - -
Bisa01g2347 669 SUPERFAMILY Homeodomain-like 225 285 IPR009057 -
Bisa01g2347 669 Pfam Response regulator receiver domain 44 153 IPR001789 GO:0000160
Bisa01g2347 669 CDD REC_typeB_ARR-like 44 158 - -
Bisa01g2347 669 FunFam Two-component response regulator 42 179 - -
Bisa01g2347 669 Pfam Myb-like DNA-binding domain 230 278 IPR001005 -
Bisa01g2347 669 Gene3D - 42 228 - -
Bisa01g2347 669 ProSiteProfiles Response regulatory domain profile. 43 158 IPR001789 GO:0000160
Bisa01g2347 669 SMART REC_2 42 154 IPR001789 GO:0000160
Bisa01g2347 669 MobiDBLite consensus disorder prediction 167 227 - -
Bisa01g2347 669 MobiDBLite consensus disorder prediction 200 214 - -
Bisa01g2347 669 NCBIfam myb-like DNA-binding domain, SHAQKYF class 228 281 IPR006447 GO:0003677
Bisa01g2347 669 SUPERFAMILY CheY-like 41 170 IPR011006 -
Bisa01g2347 669 PANTHER TWO-COMPONENT RESPONSE REGULATOR 42 428 IPR045279 GO:0009736
Bisa01g2347 669 MobiDBLite consensus disorder prediction 167 188 - -
Bisa01g2347 669 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 225 284 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2347 Bisa-ChrBisa01 43429171 43433916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2347 76 342 Response Regulator Gene Family AT3G16857 55.282 8.27e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Bisa01g2347 Response_reg 5.5e-21 CL0304