Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2343 ATGGCGATGGCGAAGGAGAGAGAGGAAGAGGAGGAGGTTCAGAGCCACGCGTGGAAGAGGCTGAAATGCATGAGAAATGGGAAAAAGGGGCAGGCGGAGGAGGAAGCTGGGGAGGATGAGAGTGAGCTCCCTCTCAAGCCAGGGCTCTTCTATTACCCGACTACACCGACGTCCTTCGTTGTGTCGGATGCACTCGAACCCGATTTTCCCATCATTTATGTCAACAAAGTGTTTGAATTCGTCACCGGCTATCGTGCCGACGAGGTTCTGGGTCGGAACTGTCGGTTCTTACAATATAGGGACCCTCGTGCTCAAAGGAGGCACCCTTTGGTGGATCCAGTTGTTGTGTCTGAGATTAGAAGATGTCTTAAGGAAGGTATTGTGTTTCAAGGTGAACTTCTGAATTTCAGGAAGGATGGCATTCCTTTGGTGAACAGGCTGAGACTTGCACCAATTCATGATGATGATGGAATTGTTACACATGTAATAGGCATCCAGCTATTCTCTGAAGCAAATATAGATCTAAACCTTGTCTCATATCCGGTATTCAAGGAGACTTGCAGTCAGGATTTTGATACGACTGGTAAATATTCTCTCAAAAGTGGACAATCATTATATGGACAGAACCAAGAGACGTGTGGCATTCTTCAGCTTTCTGATGAGGTATTGGCTCATAACATCTTGTCACGCTTGACACCAAGGGATGTTGCATCCATTGGCTCTGTGTGCAGAAGGATCCGTCAGTTAACAAAGAATGAGCATGTGAGAAAGATGGTGTGCCAAAATGCATGGGGAAAAGAAGTGACTGGTGCATTGGAACTGATGACCAAGAAGCTAGGATGGGGTCGTCTGAGCCGGGAACTAACTACTCTCGAGGCTGTTTGTTGGAGAAAATTGACAGTTGGAGGTGCAGTAGAGCCTTCACGCTGCAATTTTAGCGCTTGTGCAGCAGGGAATCGACTTGTATTGTTTGGAGGTGAAGGAGTTGATATGCAACCTATGGATGACACTTTTGTCCTCAATCTTGATGCTAAAAATCCTGAGTGGCGCAGGATTAGTGTAAAATCATCCCCACCTGGAAGGTGGGGCCACACACTGTCTTGCTTAAATGGTTCTTGGTTGGTGGTTTTCGGAGGATGTGGTAGGGAAGGATTGCTAAATGATGTCTTTGTTCTTGATTTGGATGCTCAACAGCCAACATGGAAGGAAGTATGTGGTGGAACTCCACCTCTCCCTAGATCTTGGCACAGTTCTTGCACAATTGAAGGGTCTAAATTGGTTGTCTCAGGCGGCTGCACAGATGCTGGGGTACTGCTTAGTGACACATACTTACTGGACCTTACCACAGATAATCCCACGTGGAGAGAGATTCCAACATCTTGGGCTCCTCCTTCTCGATTGGGCCACTCACTCTCAGTATATGGCAGGACAAAAATACTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGGTTACGATCAGGGGAGGCTTATACTATTGATTTAGAAGATGAAGAGCCCCAGTGGAGGCAATTAGAATGTAGTGCATTATCTGGAATAGGTGGTCAAAGCGCTGTGGTTCCTCCTCCTCGACTAGATCATGTTGCCGTGAGCATGCCCTGTGGGAGGATTATTATATTTGGAGGTTCCATCGCGGGGCTTCACTCTCCTTCTCAGCTCTTCCTTTTGGACCCTTCCGAAGAGAAACCATCGTGGAGGATCCTCAATGTTCCAGGACAACCACCAAAATTTGCCTGGGGCCATAGCACTTGTGTGGTTGGAGGTACTAGGGTTTTGGTATTGGGTGGACATACTGGGGAGGAGTGGATACTAAATGAGTTGCATGAGTTATGCTTAGCAAGCAGGCAGGATTCTGACCAAAGATGA 1890 0.4735 MAMAKEREEEEEVQSHAWKRLKCMRNGKKGQAEEEAGEDESELPLKPGLFYYPTTPTSFVVSDALEPDFPIIYVNKVFEFVTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLKEGIVFQGELLNFRKDGIPLVNRLRLAPIHDDDGIVTHVIGIQLFSEANIDLNLVSYPVFKETCSQDFDTTGKYSLKSGQSLYGQNQETCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGALELMTKKLGWGRLSRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGREGLLNDVFVLDLDAQQPTWKEVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEEPQWRQLECSALSGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDQR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2343 629 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 166 IPR035965 -
Bisa01g2343 629 Pfam PAS domain 65 165 IPR000014 -
Bisa01g2343 629 CDD PAS 55 165 IPR000014 -
Bisa01g2343 629 SUPERFAMILY F-box domain 208 267 IPR036047 GO:0005515
Bisa01g2343 629 Gene3D PAS domain 52 177 - -
Bisa01g2343 629 ProSiteProfiles PAS repeat profile. 71 102 IPR000014 -
Bisa01g2343 629 Gene3D - 208 259 - -
Bisa01g2343 629 Gene3D - 510 626 IPR015915 GO:0005515
Bisa01g2343 629 FunFam Putative LOV domain-containing protein 286 491 - -
Bisa01g2343 629 SUPERFAMILY Galactose oxidase, central domain 296 613 IPR011043 -
Bisa01g2343 629 CDD F-box_AtADO-like 214 260 - -
Bisa01g2343 629 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 39 622 - -
Bisa01g2343 629 NCBIfam PAS domain S-box protein 70 165 IPR000014 -
Bisa01g2343 629 FunFam Adagio protein 1 48 177 - -
Bisa01g2343 629 Pfam Kelch motif 533 580 IPR011498 GO:0005515
Bisa01g2343 629 Pfam Galactose oxidase, central domain 374 421 - -
Bisa01g2343 629 Pfam Galactose oxidase, central domain 423 474 - -
Bisa01g2343 629 Pfam F-box domain 215 252 IPR001810 GO:0005515
Bisa01g2343 629 Pfam Galactose oxidase, central domain 309 359 - -
Bisa01g2343 629 Gene3D - 287 509 IPR015915 GO:0005515
Bisa01g2343 629 FunFam Putative LOV domain-containing protein 492 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2343 Bisa-ChrBisa01 43384799 43390405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2343 54 167 AGC Kinase Gene Family AT5G58140 43.860 1.86e-21 97.4