Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2340 ATGTCATCGGAAAATTCGCCCAGGGAGGCGGTGGAGCCCCATGCGCCGCTCCTTCGTTCTCGACAGGGAACCTCCGATGCTTCCCGGACCCCAACACTCGCGCTTCTTCTGGGCCGTGCCACTGGCCGCCGTGGTCCTTCCATGCTGGTTCGGGAGACGGCGGCTCGCGAACTGGAGGAGCGTCGGGCCGATTGGGGCTACTCGAAGCCGGTGGTGGCGCTCGACATCACGTGGAACATGGCCTTTGTGGTGGTTTCGGCGGTGATGCTGATTTGTACGCTCCACGAGAAGCCCAACACGCCGATCCGGCTCTGGATCTGCGGCTACGCGTTGCAGTGCTTGGTTCATGTGGTGCTTGTGTGGCTCGAGTACAGTAGAAGGAATAGGTTGATTTCGCGGAGGCGGAGGGCTCAGGACGGGGATACTGAAGCTGGTAACGTTGAGGATTTAAACGACAGCGAGGATGAGGAAATTGCAGATGAGAGTTCATTGAATTCGTCTCGCCCTGGATTCACAAAAAGATGTGAATCGGTGAATACCATGGTGTCATTCCTTTGGTGGATTGTTGGCTTTTATTGGGTGGTCTCAGGTGGTGATATCCTTCTTCACAGTGCTCCACGTTTGTACTGGTTGGCTGTTGTTTTTCTGGCATTTGATGTCTTCTTTGCGATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCCCTCTGTTGTTGTTTGCCATGCATCATTGCTATTCTCTATGCTGTTGCCGGACAGGAAGGTGCTTCAGAAGCAGATCTCAGTGTGCTTCCAAAATACAGATTTCGTGCATTAAACAATGAGGACAAGCCTAATGGTGGGGCGGGATCAATGGTTCCTGTGGAAACAAGCAGTGGATACTTGGCAAATGAACGTATACTTTTACCTGAGGATGCGGAATGCTGTATATGTCTTACTTCATACGAGGATGGAGCAGAACTCCATGCTCTACCCTGCAACCATCATTTCCATTCTACGTGCATTGTGAAATGGTTGAAAATGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTTAAGGGAAATGAACAGTTGTGA 1083 0.5078 MSSENSPREAVEPHAPLLRSRQGTSDASRTPTLALLLGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDITWNMAFVVVSAVMLICTLHEKPNTPIRLWICGYALQCLVHVVLVWLEYSRRNRLISRRRRAQDGDTEAGNVEDLNDSEDEEIADESSLNSSRPGFTKRCESVNTMVSFLWWIVGFYWVVSGGDILLHSAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSVLPKYRFRALNNEDKPNGGAGSMVPVETSSGYLANERILLPEDAECCICLTSYEDGAELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2340 360 FunFam E3 ubiquitin protein ligase RIE1 289 357 - -
Bisa01g2340 360 SUPERFAMILY RING/U-box 297 354 - -
Bisa01g2340 360 MobiDBLite consensus disorder prediction 142 169 - -
Bisa01g2340 360 Pfam Ring finger domain 308 350 IPR001841 -
Bisa01g2340 360 MobiDBLite consensus disorder prediction 1 28 - -
Bisa01g2340 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 358 IPR013083 -
Bisa01g2340 360 SMART ring_2 309 349 IPR001841 -
Bisa01g2340 360 MobiDBLite consensus disorder prediction 145 160 - -
Bisa01g2340 360 CDD RING-H2_PA-TM-RING 308 350 - -
Bisa01g2340 360 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Bisa01g2340 360 PANTHER TARGET OF ERK KINASE MPK-1 40 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2340 Bisa-ChrBisa01 43324725 43330679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2340 1 359 C3H Transcription Factor Family AT1G68070 69.638 0.0 510