Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2262 ATGCTTCACCACTCTGCTCACAATAATTCCTCTGCCTCTGATGCTGCTTCCTCACAACATAATGGTGCCCTCCCCAAACGAAGAAGACGACCCCCCGGCACACCAGATCCAGATGCAGAGGTGGTGTGTCTGTCACCGAAGACCCTATTGGAATCAGACAGGTATGTGTGCGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAATCTGCAGATGCACAGGAGGAGGCACAAGGTGCCATGGAAACTGCTCAAGAGGGAGACTGGTGCGACCCAGGAGGTGAAGAAGAAGGTGTTTGTGTGCCCTGAGCCGTCCTGTCTGCACCATGATCCGTGTCATGCCCTGGGAGATCTCGTGGGCATCAAGAAGCACTTCAAGAGAAAGCACAGTAATCACAAGCAGTGGGTGTGTGAGAAGTGCTCCAAAGGCTACGCTGTTCAGTCTGATTACAAGGCTCACCTCAAAACCTGCGGGACTCGTGGCCACTCCTGTGACTGTGGTCGTGTCTTTTCCAGGGTCGAGAGCTTCATAGAACATCAAGATGCGTGTAGTGTTCGGCATTTACGGCCAGATCAGTCACAAGCAACACAGCCTGCAGCTTCTTCTCGAACAGCATCAAGCACAAGTCCATCCAGTGAGGCCAATATAAGCATAGTAGCTCCGTTACTTCAAGCAGGCCTGCCTAAGCAACCAAAACCACCTGATCACAACCCTCCTTCTGCTTTATTAACCTCGCATCCTCCTCACAAACGTAACAATATTCTAGAAGAACTCCAGCTCCTACGTTTTTGTTCTTCAGTAGATGCTCGAGGAAACCGAGGTTCTAATTATCATGAGGACAACAACTTCGAAACTGAAACCCACTTGAAGCTCTCAATAGGATCATGCAGTAACAGTAATCGGAATGAGAACATTGTGAATGAAGGTGAAGGTGAAGGAGACGCAGCAACGAGATCAACGGAAGTGGGATGGTTGAAAGAGAGTGCAAGCGAGGAGCTGAAGCTGGCGATGGCGGAGAAGGCGTATGCAGAAGAGGCAAGAAGAGAGGCGAAGAGGGAGATTGAGATGGCTGAGGTTGAGTTTGGGAGAGCCAAGAGGATGAGGAAGGAGGCGAAGGAGGAGCTTCAGAAGGCTGAGGCTTTGAAGAAGCAAGCCATGATGAAGATGAGCTCTACCCTCTTGCAGATCACCTGTCAGGCCTGTAAGCAACAGTTCCAATCGTCTAATTCCATGGTTGGGATTGGAGTTTCTTCCGAAGAGACTTCCCTTGTCATGAGCTACATGTCCTCGCCTGCCACCGAAGGCGACGGGGAATGA 1317 0.5087 MLHHSAHNNSSASDAASSQHNGALPKRRRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETGATQEVKKKVFVCPEPSCLHHDPCHALGDLVGIKKHFKRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACSVRHLRPDQSQATQPAASSRTASSTSPSSEANISIVAPLLQAGLPKQPKPPDHNPPSALLTSHPPHKRNNILEELQLLRFCSSVDARGNRGSNYHEDNNFETETHLKLSIGSCSNSNRNENIVNEGEGEGDAATRSTEVGWLKESASEELKLAMAEKAYAEEARREAKREIEMAEVEFGRAKRMRKEAKEELQKAEALKKQAMMKMSSTLLQITCQACKQQFQSSNSMVGIGVSSEETSLVMSYMSSPATEGDGE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2262 438 MobiDBLite consensus disorder prediction 187 214 - -
Bisa01g2262 438 MobiDBLite consensus disorder prediction 1 20 - -
Bisa01g2262 438 Coils Coil 326 388 - -
Bisa01g2262 438 SUPERFAMILY beta-beta-alpha zinc fingers 54 155 IPR036236 -
Bisa01g2262 438 MobiDBLite consensus disorder prediction 226 248 - -
Bisa01g2262 438 Gene3D Classic Zinc Finger 33 102 - -
Bisa01g2262 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 410 IPR031140 -
Bisa01g2262 438 Gene3D Classic Zinc Finger 120 201 - -
Bisa01g2262 438 FunFam protein indeterminate-domain 12-like 34 105 - -
Bisa01g2262 438 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Bisa01g2262 438 SMART c2h2final6 135 162 IPR013087 -
Bisa01g2262 438 SMART c2h2final6 55 77 IPR013087 -
Bisa01g2262 438 SMART c2h2final6 99 129 IPR013087 -
Bisa01g2262 438 MobiDBLite consensus disorder prediction 227 241 - -
Bisa01g2262 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Bisa01g2262 438 MobiDBLite consensus disorder prediction 1 40 - -
Bisa01g2262 438 Pfam Zinc finger, C2H2 type 55 77 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2262 Bisa-ChrBisa01 40860641 40863000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2262 21 438 C2H2 Transcription Factor Family AT2G01940 54.734 8.28e-148 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa01g2262 zf-C2H2 0.0041 CL0361