Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2256 ATGAACTTCTCAGACGAGTGGAAGTCCTACTTTCCAGTCTTATCATCTGGTGCAAGCCCCCTCCTTTCTGACTCTTCTGCACGAACGGTTGGTCCCCTCATCTTCAATCCTATTCCTCAAACCCTAACACATATTTTCTCCTCCTCTTCTCTCTTGCCCCCTCTTCTTCCTATTCCTCAACTCTCTCTTTCTCGATTTCTGGTGACCTCTTCTTCTGATTCCCCCGTTCTTCCCTCTACTGCATCCTCTATTGCCCCTCTTTCTGGTCCCCAGTTCCTAAACGACGTCGCCTACGCTTTCCGTTACAACCGCCTTGAGTTTCTCAAGTATGGCGACGGTGTTGTTCTCTTCTTTCCCACTGGTGAGAATTCTGAGCAAGTTGGGTTTTTGTACGTCGATTTTAAGGATTCGGATTTGCGCGTTCAGCTTGACGGTAACGGGGATATTTGTCGGGCCGCAAGTGGAGCAAGCTACCGCATTTTGAGGATTTCAGTGAACCCAGTTGATGATGCGGACGAGTCTTCTTCTACTGTTGGGTATTTGTTGGCTTCCACACTCTACTCTGTTCATTGGTTTTCTGTAAAACGTAATTCAAGTTTGGATAGGCCCAGTGTAATATATATGGGCAGCAAAATCTTCAAGACTTGCCCTGTTGCCCATGCTTGTTGGAGTCCGCATATACCTGAAGAAACTCTGGTTTTGCTGGAAAATGGTGAATTGTTCCTGTTTGATTTAAGGCATCATATGGACAAGACTCCTAGTTCAAATGTCAACTTTAAGGGAACTAGGTTGAGGGTAATATGGGATGATTCAGATTCTTGTAAAGACAAAGTATGGCTGAGTTGTGAATTTAGTTGGCGTCCTAGAACTTTTATTGTGGCGTGTTCTGATGCTGTTTTTTCAGTTGATTTGAGTCAAGATGAATGTATCATACAATGTCTACTTAAGGTTGAGATGTTGCATAGGTATACGCCAGCTGAAAATGAACGATTTCTAGTTCTTTCAAGGGCAGGTCCTGACATTTTCTTCTTTACCGTGGCTTCCAACAGTTTTTTACTTCTATGTGACGTGCGGAAGCCTACAATGCCGGTCTTACAATGGGCTCATGGTCTTGACAGGCCATGCTTCATAAATACGTTAAACTTGTCTACGTTGAGGTCACATCCAAGGGAAGATACATTTGAGCTAGCTTCCGATTCTGGATTCTGTATTATATTGGGATCATTTTGGAATAGTGAGTTCAGTCTCTTCTGCTATGGATCTCCATTAGCATCTAAAAAAGGATCTATTGTTGCTAAGCTTCAAAAGATTGAGAAGACCTTCTGTGCATGGGGGCTTCCATCTGAGATTGTGTTATCTGGCCATGAGTGTCGTTGTGGAAGTTGTCTCTTAACGGAAGAGTTGACAAAGGTTGCTCTTCCTGAATGGATTGACTGGCAGATGAAGAAAGAAATAGTTGTGGGTTTTGGCATCATAAACAATGGCATCGCTTCCTTACTTAGTGAACCAGATACATATGGAGGATTTACTCTGGTAAGGCTAATGTCCTCTGGGAGGCTTGAATTGCAGAGATATCAAGCCTCCTGGGTTCCTGATAGAAAGTCAGAAGATTGCCATGAACAATCGTTATGTTTGGACAGACATCTATTGTTTTCTGTGGGCGATGAGAAATACAAGTTTCCTAAAATTTTTAAGTTCCTAAATTTGAATAACCTCTATGCATATCTAAGAGGCAACCTTACTGAACTCCTGGTTAGAAAACTGAAAGAGCCTCGTATGGATGCTCAGGAGAAGGAGAAGGAATCCTTTGACACAGAAGTACATGAAGTCTTGTGTGAGAAGTTGAACGCTTGTGGGGTTGGTCCTTTTAGATCATCTCCTGCAATCACTGCTTTCTTTAAAGATGTAAAGCTACCAGCAAGCCTCCATGAGGTTGCTTTAAGAAGACTGTGGACTGAGTTGCCTTTGGATCTGTTGCAATTGGCATTTTCAAATTATTCTGAATTCCTTGATGTAATTGTTGACCAAAAAAAGGTTCCTTTGGAATTTTTAGTTGTTCCAGACCTTCCTCAATTGCCTCCATTCATTTTAAGGAGATCATCACCCCGCAGCAATAAGTGGTCTAATAAAGTGCAGCGTAGTGATGATATAGTGGGTCCAGTTCTTCCTCTTCCTATTCTACTTGTGCTTCATGAAATTTACAATGGATGTTCAGATTTGGAAGATGGTAAATTTTCTGTGGAAGCAGAGCTCGGCCTCAAATACAAAGAGGTTATTAAGGTGGCTGGTGAGATTTCTGTTTCAACTTCTGGTTCTGAGTTCTTTGATGATCATGCAGTCTCCCTTGCTGATGATTGTGAGGAAACCTGGGTTGATTCTTTAAAACCCAAACCTTTCTCACTATACCGTCCGGTTGCATCCAAGTGCTTTGCCTCGGACCTTGTTAATGGGAACTCTATCTATAGGGACAAGATTTATGATACATTAATTTTTCATGTTCCGGAGGAGAAGATTGTTTCTAGTGAGAAGACTGAGTCAGTTGGTCCAGAGATATTTGATGATCTTTGCCCTGTAGAGTTGAAGTTTAATGCTCCTGTTATGAAATTTGAACCTATGGGTTTAAAGGCATATAATGTATTAAAGAGGCAGATGTCTAAATGGCAAGAAGGTTTTGATTCATACAAGGAGTTCTGTATTCAGTCTAGATTTAAAAGGGTAATATGCTACTCACTGTATTTGAGATCCAGTAATGTCATTTTTCTTGGACAGCTTGCTTCTTTGACATCAACCATAGTGGAGCATGTTATAGCTCCTGACGTTAGGCTTGAAATTCTTGATCTGACTTCAAGATTGCTTATGCCTATAATTGTCTTGCAAAATCACAATCGATACAATATTATGGAAAAGAGCCATAACTATAGTGTTAATGTAGAAGAAATTGAGAGAGAGAAGTTGGCAATTGCTGTGTCAAAATCTATACGTGGACATTCTTTGCAAGAAACCAAGAATGATGGTCGTTTCCATTTCCATACCAAGATGTATATGGGTGGTGCTCTTTTAAAAGAGATGGCTGCTTTCTTAGCGATGGAATGTTCTGCTGATGTGCTTGCTGCTGGATTACTTGAAGTAGCAGATCCATCTCTCTTTGTGCCATCGTTGGCAGATGTGGATCCAAACCTTATGATGGAAGATGAAAGTCTGGATACTAAATGCTCAAATGCTGGAGTATTTCCACCTGCAAAGGCAGAAAAGCTGTCAAAAAGTGTATTTATTTCCAAGCTTCTGGCTTCATCATCCTCTGTCTTTCCTGACCGTTGGACAAGGTCTCACTTTCGGGCATCTCTTCCAGAATCAAAAACAAAAATTGTCTCAGCGTCTAATGAGGGAAATAGCAGTAGTCAAACGGTTGAAAGCAATGAGGGCAAAGTTAAGAGAAAGGTTGATGATGATGGTTCAATCTCAGATTCTAGCAAATTGAAACAGTGTCCGATGTGTTTCCAAAGGTTGGTCACCATTTGTAACAAAGACGCAATGGAAGAAGTGCTGTGGTTACAATGGCTGTATCAGCTGAAGGATGCTTTGGATGCTGCCGAAGAAGGGAGTGATGAAATTCAAAACAGGTCAGGCAAGTCAACTCCGTCGCAGGCTAGGAAGCGAGTTGATGCGGTTGATTCTCGGGCCGGTGCTGCTCTTGTTCGCGCCAAAGATGGCAGTGCTTTTGCCAAATGTGATGAGTGCAACAAGAATGTTCCTGTGGCGCTTATCAGCATGCATAGCTGCAGCCTTGAAGCTAAAATCAAAATGAATCTGGAGGCTCAGGTTGTGGAAAAGGCTGCTGAACCCAAGAAACCAGCTGAGAGGAAGAAGTCTACATCAAAAGAACCTAAGGCAAAAAGGGCCAAGGTGGAGAAGGTGAAGGAGAAGAAGAGCAAAGACCCTAACAAGCCCAAGCGTCCTGCCACAGCCTTTTTTGTCTTCCTGGATGAATTTAGAAAAGCTTTTAAGGAAGCAAATCCTGATTCAAAGGATGTTAAAAGGGTTACCAAAGAAGCAGGTGAGAAGTGGAAGTCCTTGTCTGATGAAGAGAAGAAGCCTTACTTGGATAAGGTTGCTGAACTCAAGGCAGAATATGAGAAGGCCTTAGAAAGCTATAATGCTGGAGCAGATGATGGTCAAGAGGGGTCCGATAAGGAAGACGCAGCAGAGGAAGTGGGTCAAGAGGGGTCCGATAAGGACGACACTGCAAAGGAAGTGGAAGAGATCACTGATGAGGAGTGA 4278 0.4236 MNFSDEWKSYFPVLSSGASPLLSDSSARTVGPLIFNPIPQTLTHIFSSSSLLPPLLPIPQLSLSRFLVTSSSDSPVLPSTASSIAPLSGPQFLNDVAYAFRYNRLEFLKYGDGVVLFFPTGENSEQVGFLYVDFKDSDLRVQLDGNGDICRAASGASYRILRISVNPVDDADESSSTVGYLLASTLYSVHWFSVKRNSSLDRPSVIYMGSKIFKTCPVAHACWSPHIPEETLVLLENGELFLFDLRHHMDKTPSSNVNFKGTRLRVIWDDSDSCKDKVWLSCEFSWRPRTFIVACSDAVFSVDLSQDECIIQCLLKVEMLHRYTPAENERFLVLSRAGPDIFFFTVASNSFLLLCDVRKPTMPVLQWAHGLDRPCFINTLNLSTLRSHPREDTFELASDSGFCIILGSFWNSEFSLFCYGSPLASKKGSIVAKLQKIEKTFCAWGLPSEIVLSGHECRCGSCLLTEELTKVALPEWIDWQMKKEIVVGFGIINNGIASLLSEPDTYGGFTLVRLMSSGRLELQRYQASWVPDRKSEDCHEQSLCLDRHLLFSVGDEKYKFPKIFKFLNLNNLYAYLRGNLTELLVRKLKEPRMDAQEKEKESFDTEVHEVLCEKLNACGVGPFRSSPAITAFFKDVKLPASLHEVALRRLWTELPLDLLQLAFSNYSEFLDVIVDQKKVPLEFLVVPDLPQLPPFILRRSSPRSNKWSNKVQRSDDIVGPVLPLPILLVLHEIYNGCSDLEDGKFSVEAELGLKYKEVIKVAGEISVSTSGSEFFDDHAVSLADDCEETWVDSLKPKPFSLYRPVASKCFASDLVNGNSIYRDKIYDTLIFHVPEEKIVSSEKTESVGPEIFDDLCPVELKFNAPVMKFEPMGLKAYNVLKRQMSKWQEGFDSYKEFCIQSRFKRVICYSLYLRSSNVIFLGQLASLTSTIVEHVIAPDVRLEILDLTSRLLMPIIVLQNHNRYNIMEKSHNYSVNVEEIEREKLAIAVSKSIRGHSLQETKNDGRFHFHTKMYMGGALLKEMAAFLAMECSADVLAAGLLEVADPSLFVPSLADVDPNLMMEDESLDTKCSNAGVFPPAKAEKLSKSVFISKLLASSSSVFPDRWTRSHFRASLPESKTKIVSASNEGNSSSQTVESNEGKVKRKVDDDGSISDSSKLKQCPMCFQRLVTICNKDAMEEVLWLQWLYQLKDALDAAEEGSDEIQNRSGKSTPSQARKRVDAVDSRAGAALVRAKDGSAFAKCDECNKNVPVALISMHSCSLEAKIKMNLEAQVVEKAAEPKKPAERKKSTSKEPKAKRAKVEKVKEKKSKDPNKPKRPATAFFVFLDEFRKAFKEANPDSKDVKRVTKEAGEKWKSLSDEEKKPYLDKVAELKAEYEKALESYNAGADDGQEGSDKEDAAEEVGQEGSDKDDTAKEVEEITDEE 1425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2256 1425 Coils Coil 1187 1207 - -
Bisa01g2256 1425 MobiDBLite consensus disorder prediction 1337 1366 - -
Bisa01g2256 1425 MobiDBLite consensus disorder prediction 1139 1155 - -
Bisa01g2256 1425 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 1316 1385 IPR009071 -
Bisa01g2256 1425 CDD HMG-box_AtHMGB1-like 1317 1377 - -
Bisa01g2256 1425 MobiDBLite consensus disorder prediction 1277 1316 - -
Bisa01g2256 1425 MobiDBLite consensus disorder prediction 1200 1222 - -
Bisa01g2256 1425 SUPERFAMILY HMG-box 1307 1387 IPR036910 -
Bisa01g2256 1425 MobiDBLite consensus disorder prediction 1122 1157 - -
Bisa01g2256 1425 Pfam HMG (high mobility group) box 1316 1385 IPR009071 -
Bisa01g2256 1425 Gene3D High mobility group box domain 1299 1396 IPR036910 -
Bisa01g2256 1425 SMART hmgende2 1315 1386 IPR009071 -
Bisa01g2256 1425 MobiDBLite consensus disorder prediction 1277 1318 - -
Bisa01g2256 1425 MobiDBLite consensus disorder prediction 1383 1425 - -
Bisa01g2256 1425 MobiDBLite consensus disorder prediction 1122 1138 - -
Bisa01g2256 1425 MobiDBLite consensus disorder prediction 1391 1416 - -
Bisa01g2256 1425 PANTHER TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C 1 901 IPR038801 GO:0006360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2256 Bisa-ChrBisa01 40781257 40794540 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bisa01g2256 HMG_box 2.1e-19 CL0114