Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2252 ATGCCTAACAATGTCGACCATCTCCGTGATTTCATTAATTCAACTTGGAAAGCTTGTTCTCTTTTAGGCAGCTGGGTTTCCAGTTTAATAACAAAATCTTATAGAGACGTGGAAAGGGAAAGTTATTCAGATTTCATGGCTCAGCTGGATTGTATATATATTAGTTCATCGGATGATGACTTGGAGCTGGAGGATATTGGAACACCAAATTATAGAAACCTTCCAGCATGGGCTGCTAGTGGAAGTAATGCTGGTTATGGTGGAGGGCACGAGCAGGGTAGTTCTTCAAAAGGGGAAAATGCTTTGAATGCAAGCTCTTCTAGTGGTCATAAGTATAATCATTCACAAGCTGAGCAGTGTAGTCAACCTGGGCCCAGTAACAATGTGCTGAATTGCAGAGTTGTACATGGAGATGAATCTTTCAGTTCTTCAGTGAACAGAAGCACAAGTCAGCATCAAACAGTTAGTTCACAAATTGCTAATACTGGTGCTGATTATGAGAACATGGCATCCCAACAAGCTCTGAAGAGGACCCTTCCAAAATCCCTTCAGCCATCTTCAACAAGGCCTCTACCATTTTCTCGTAAATCATTTGCACCAGAGACTAGATCAAACAACTTGAAAGATAACAGGAGCAGAAGTCATATTTATGATACTCATGGGAATTATCATCATGTAGTAGGACCTAGCATTAACAGGGGAAATGAAGAACATGTCATTCATCAAAATGGTGGGACTAGAATTCTTCCTCCATCTTTGATGCATGGAAAGGTCACCTCTTTTACACAGTTGGCTAGTTCGAGTGAATCTACATACCGCTTCGGGGCAGGTGAAGAAGGGGCTTCGGAAAATGATGAGAGACTAATTTATCAGGCAGCATTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTACTTTACCTGATGGTCTATTGTCTGTGTCACTTCTGAGGCATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACTAGAAGTTTGCATTGCTTGGGGGGAATTCTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGGTTGTTGCAGTCAACATCAAAAACAGATGAGACATGCAATCATAAGACTGAAGCATTGAATTTGGATGAGGATGATGATAATTGCAGTGCTAATGTGGAAAAATCTGAAAAGAATGAAGAATCTGATGAAAGAAAACCTATTCGTGGATCAGTTAGTTTAAATTCAACACGGGGGCTAGGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTACTGTTCTCCGACAGTGGGCAAGGGAGCTTGATGATAAAGTTGGAGATGAAGCTAAGCTTTCTGTGTTGATATATCATGGGGGTAATAGGACAAAGGATCCTGATGAACTTGCAAAATATGATGTTGTTCTCACAACGTATTCTATTGTGACTAATGAAGTCCCAAAGCAACCTTTAGTTGAAGAGGATGACATTGATGAAAGAAATGGGGAAAAATTTGGGTTGTCCTCTGAGTTTGCTTTTGGTAGAAAGAGGAAAAAGATGTATAATGAAGGTAAAAAGAGTAAAAAGGGGAAAAAGGGAATTGACAGTTCTTTTGATTGTGCTTCTGGTGCTCTTGCAAAAGTTGGTTGGTTTAGAGTTGTTCTAGATGAAGCTCAAATGATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTACGAGCCAAAAGAAGGTGGTGTTTGTCTGGAACACCTATTCAAAACACTATTGATGATTTGTATAGCTATTTCAGATTCCTGAAGTATGATCCTTATGCTATATATAAGTCCTTCTACAATACAATAAAAGTTCCAATATCCAAAAATTCTATCCAGGGTTACAAGAAGCTTCAGGCAGTTTTGAGGGCTATAATGCTACGCCGTACAAAAGGAACATTGATTGATGGGGTGCCCATAATCACTTTGCCCCCTAAAACAGTTCGGCTGAATAAGGTGGATTTCTCCTTAGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTACTCAGTTTAAGGCGTATGCTGCTGCTGGTACAGTTAATCAAAACTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGCGATCACCCGCTTCTTGTTAAAGATCATAATTCCGATTTTGTTGGGGAAAATTCGGTGAGAATGGCAAACATGCTTCCAAGGGAGATGCTGGTTAATCTCTTCAATTGTTTGGAAACATCCTTTGCCATATGTAGTGTTTGCAATGATCCACCTGAAGACTCAGTTGTTACTATGTGTGGCCATGTTTTCTGTTATCAATGTGTATCAGAATATTTGACGGGTTATGATAATATGTGCCCTGCAGTTGATTGTAAAGAACAAATTGGTGATGATGTTGTTTTCTCCAAAGCTACTCTAAGAAGTTGCATCTCTGCCTCTGGTGACTTTGGTGATGGTAGTTCTGCAAATTATCATCATGTTGATTATTCAGTTGTACAGCAGAGAAATTACAGCTCATCTAAAATCAGAGCGGTCCTTGAGATTCTTCAGTTATATTGTAAATTAAAGAGTCCAGGTTTTGATCAAGTGGGTTCCTCTGGATGTGGTAGAAATTCATCGTCTTCTGAAACTTCTGATGTTGGTGTTACAAAACACACCAGAAAATATTCAGAGTGCACAACTGAAGGGCCAATAAAGGCTATTGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTTGAAGATTCAATGAAAGAGTCTTGTATCAGATACAGGAGACTTGATGGTACCATGACGCTGGTTGCAAGGGATAAAGCTGTTAAGGATTTCAATACTGATCCTGAGGTAACTGTCATGCTGATGTCATTAAAAGCAGGAAACCTTGGTTTGAACATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGACCCGTCCTGTTACTGTGACACGGCTTACTATAAAAGATACAGTTGAAGATAGAATATTGGCTCTCCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATCATGCTGGCGGTTCTGCAGCTCGCCTCACCGTGGATGATCTAAAATATCTTTTCATGGTCTAA 3192 0.4054 MPNNVDHLRDFINSTWKACSLLGSWVSSLITKSYRDVERESYSDFMAQLDCIYISSSDDDLELEDIGTPNYRNLPAWAASGSNAGYGGGHEQGSSSKGENALNASSSSGHKYNHSQAEQCSQPGPSNNVLNCRVVHGDESFSSSVNRSTSQHQTVSSQIANTGADYENMASQQALKRTLPKSLQPSSTRPLPFSRKSFAPETRSNNLKDNRSRSHIYDTHGNYHHVVGPSINRGNEEHVIHQNGGTRILPPSLMHGKVTSFTQLASSSESTYRFGAGEEGASENDERLIYQAALEDLNQPKVEATLPDGLLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALIQMQRLLQSTSKTDETCNHKTEALNLDEDDDNCSANVEKSEKNEESDERKPIRGSVSLNSTRGLGRKRPAAGTLVVCPATVLRQWARELDDKVGDEAKLSVLIYHGGNRTKDPDELAKYDVVLTTYSIVTNEVPKQPLVEEDDIDERNGEKFGLSSEFAFGRKRKKMYNEGKKSKKGKKGIDSSFDCASGALAKVGWFRVVLDEAQMIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAIYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGVPIITLPPKTVRLNKVDFSLEERAFYTKLEADSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDHNSDFVGENSVRMANMLPREMLVNLFNCLETSFAICSVCNDPPEDSVVTMCGHVFCYQCVSEYLTGYDNMCPAVDCKEQIGDDVVFSKATLRSCISASGDFGDGSSANYHHVDYSVVQQRNYSSSKIRAVLEILQLYCKLKSPGFDQVGSSGCGRNSSSSETSDVGVTKHTRKYSECTTEGPIKAIVFSQWTSMLDLVEDSMKESCIRYRRLDGTMTLVARDKAVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDHAGGSAARLTVDDLKYLFMV 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2252 1063 MobiDBLite consensus disorder prediction 87 129 - -
Bisa01g2252 1063 CDD DEXDc_SHPRH-like 315 646 - -
Bisa01g2252 1063 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 895 1058 IPR001650 -
Bisa01g2252 1063 SUPERFAMILY RING/U-box 758 812 - -
Bisa01g2252 1063 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 106 1062 - -
Bisa01g2252 1063 SMART helicmild6 922 1005 IPR001650 -
Bisa01g2252 1063 CDD SF2_C_SNF 906 1015 - -
Bisa01g2252 1063 MobiDBLite consensus disorder prediction 137 205 - -
Bisa01g2252 1063 ProSiteProfiles Zinc finger RING-type profile. 762 798 IPR001841 -
Bisa01g2252 1063 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 411 498 - -
Bisa01g2252 1063 SMART ring_2 762 800 IPR001841 -
Bisa01g2252 1063 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 755 812 IPR013083 -
Bisa01g2252 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 646 IPR027417 -
Bisa01g2252 1063 Gene3D - 519 659 IPR038718 -
Bisa01g2252 1063 ProSitePatterns Zinc finger RING-type signature. 777 786 IPR017907 -
Bisa01g2252 1063 Gene3D - 284 380 IPR038718 -
Bisa01g2252 1063 Pfam Zinc finger, C3HC4 type (RING finger) 761 806 - -
Bisa01g2252 1063 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 527 658 - -
Bisa01g2252 1063 SMART ultradead3 311 625 IPR014001 -
Bisa01g2252 1063 Pfam SNF2-related domain 318 723 IPR000330 GO:0005524|GO:0140658
Bisa01g2252 1063 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 330 608 IPR014001 -
Bisa01g2252 1063 Gene3D - 661 1062 IPR027417 -
Bisa01g2252 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 1062 IPR027417 -
Bisa01g2252 1063 Pfam Helicase conserved C-terminal domain 907 1005 IPR001650 -
Bisa01g2252 1063 MobiDBLite consensus disorder prediction 377 408 - -
Bisa01g2252 1063 MobiDBLite consensus disorder prediction 85 215 - -
Bisa01g2252 1063 MobiDBLite consensus disorder prediction 377 422 - -
Bisa01g2252 1063 Gene3D - 411 500 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2252 Bisa-ChrBisa01 40699845 40707757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2252 155 963 RAD5 or RAD16-like Gene Family AT1G50410 58.745 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa01g2252 SNF2_N 3.5e-67 CL0023