Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2251 ATGGTTATCCGGGAACCTGACGGAGTTGCTGCTGAGATAAAATTAGATGTGGCCTTAGTAGCGTATAAATCAGTGGAGAATGTTAAGAGGAGGAGAGATAGCAACATGGATTCTCTTTCTTGGTTGGCCAAGGAAAGAAAAAGTTATTCAGATTTCATGGCTCAGCTGGAGTGTATATATATTAGTTCATCGGATGATGAAGTGGACCTGGAGGAGATAGAAAACCCAAATTATAGAAATCCTCCTGGAAGGTCTGCTAGTGGAAGTAATGCTGGTTATGGTGGAGCGCTTACACAGTATAATTCTTCTAAACATGCAAATACTTTGAATGCAAGCTCCTCTAGTTCTTATAATCATTCGCAAGGCGGGCATTTTATTGAACCTGGGTCCGGCAACTATATGCTGAATCGCAGGGTTGCACGCGGAGATGAGTCCTTTAATTTTTCAAAGAATGGGAAAACAAGTCAGCTTCAGACAGTTAATCCCCGAATTGCCAATACTTCTGGTGCTGATTATGAGAAAATGCCATCCCAACAAGCTATGAAGAGGACCATTCCATTGTCTCTTCAGCCATTTGCAGCAAGGCATCTTCCATCTTCTCTTCAGTCATTTGCACCAGGAAGTAGCATGAACATTGATAAAGGCTATTTGCGTGATAGCTACAGTAGGGGCAATGATGACTGCATCATGTATCCAAATAGTGGGATTAAGATTCCTCCTCCACCTTTAATGCTTGGAAAGTTCATCTCTGGCACTCATTTAGCAAGTTCAAGTGAATTCACATACCGTTCTGGGGTAGGGGAAGAAAGGACCTCTGAAAACGATGAGAGACTAATTTATCAGGCAGCATTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTACTTTACCTGATGGTCTATTGTCTGTATCCCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAAAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGAATTCTGGCTGATGATCAGGGCCTTGGAAAGACAGTTTCGATGATTGCGCTCATACAAATGCAGAGGTCATTGCAGTCGAAATCAAAAACAGATGACAAGTGCAATCATAAAACTGAAGCATTGAATTTGGACGAGGATGATGATAATGGCAGTGATAATGTGGAAAAATCTAACAAGAATGAAGACTCTGATGATATAAAACCTGTTTCCGAATCGGTTAGTTCAACTTCAACCCGTGCGATAGGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTCCTCCGACAGTGGGCAAGGGAACTGGATGACAAAGTAGGAGATGATGCTAAGCTTTCTGTGTTGGTTTATCATGGGGGTAACAGGACAAAGGATCCTGCTGAACTTGCAAAACATGATGTTGTTCTCACAACATATTCTATTGTGACTAATGAAGTTCCAAAACAACCTTTAGTCGAAGAGGATGAAATGGATGAAAAACTTGGGGAAAAATTTGGGTTATCTTCTGAGTTTGCTTTTGGTAAAAAGAGATCAAAAAAGACATATAATGCAGGTAAAAAGAGTAAAAAGGGGAAAAAGGAGATTGACTGTTCTTTAGATTGTGTTTCAGGGCCTCTTGCAAAAGTAGGTTGGTTTAGAGTTATTCTAGATGAAGCTCAAACAATTAAGAACCATAGAACACTGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGAACACCTATTCAAAATGCTATTGATGATTTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGTGTATAAGTCCTTCTACAATACAATAAAAATTCCAATATCCAAAAATTCTATCCAGGGTTACAAGAAGCTTCAAGCAGTTTTGAGGGCTATAATGCTGCGCCGTACAAAAGGAACATTGATTGATGGGGAGCCTATAATCAGTTTGCCACCTAAAACAATTGAACTGAATAAGGTGGATTTCTCTATTGAGGAGCGGGCCTTCTACACCCAGTTGGAAGCAGATTCACGCACTCAATTTAAGGCATATGCTGCTGCTGGTACAGTAAATCAAAATTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAAGCCTGCGACCACCCACTTCTAGTTAAAGATTATAGTTCCGATTTTGTTGGGGAAAATTCTGTAGAAATGGCAAAAACGCTACCAAGGGAGATGCTAGTTAATCTCTTTAACTGTTTGGAAACAATTGCCATATGTTGTGTATGCAATGATCCACCTGAAGACCCTGTTGTTACTATGTGTGGTCATGTTTTCTGTTATCAGTGTGTATCAGAACATATGACGGGTTATGATAATATGTGCCCGGTAGCTGATTGTAAAGAACCAATTGGTGATGTTTTCTCCAAAGCTACTTTAAGAAGTTGCATCTCCGGTGACCTTGGGAATGGTAGTTCTTCGGATTCTCGTCTTGATTATTCGGTAGTACAGCAAAGTAATTACAGTTCGTCTAAAATCAGAGCGCTCCTCGAGATTCTGCGGCTACATTGTAAATTAAAGAGTTTCAGTTCTAGCCAAACTTGGGAGATTGAAAATTGTGATTCAGATGTTAGTGTTACCAGACGCACAACTGAAGGACCACTAAAGGCTATTGTTTTTTCCCAGTGGACTTGCATGTTGGACTTAGTTGAAGAATCGCTGAAAGAGTCCGGTATTCAATACAGAAGACTCGATGGTACCATGACCCTCGTTGCAAGGGATAAATCTGTGAAGGATTTCAATACTGATCCTGAGGTAACTGTCATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAACATGGTTGCTGCATGTCATGTTATTCTTATGGATCTTTGGTGGAATCCAACGACTGAAGACCAAGCCGTCGATCGAGCTCATAGAATTGGACAGACCCGTCCTGTTACTGTGACGCGGCTTACTATAAAAGATACAGTTGAAGATAGAATCTTGGCTCTCCAGGACGAAAAGAGAAAAATGGTTGCTTCTGCTTTCGGTGAAGATCAGGCCGGCGGTACTGCAACTCGCCTCACAGTAGACGATCTAAAGTACCTTTTCATGGTCTAA 3105 0.4132 MVIREPDGVAAEIKLDVALVAYKSVENVKRRRDSNMDSLSWLAKERKSYSDFMAQLECIYISSSDDEVDLEEIENPNYRNPPGRSASGSNAGYGGALTQYNSSKHANTLNASSSSSYNHSQGGHFIEPGSGNYMLNRRVARGDESFNFSKNGKTSQLQTVNPRIANTSGADYEKMPSQQAMKRTIPLSLQPFAARHLPSSLQSFAPGSSMNIDKGYLRDSYSRGNDDCIMYPNSGIKIPPPPLMLGKFISGTHLASSSEFTYRSGVGEERTSENDERLIYQAALEDLNQPKVEATLPDGLLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTVSMIALIQMQRSLQSKSKTDDKCNHKTEALNLDEDDDNGSDNVEKSNKNEDSDDIKPVSESVSSTSTRAIGRKRPAAGTLVVCPASVLRQWARELDDKVGDDAKLSVLVYHGGNRTKDPAELAKHDVVLTTYSIVTNEVPKQPLVEEDEMDEKLGEKFGLSSEFAFGKKRSKKTYNAGKKSKKGKKEIDCSLDCVSGPLAKVGWFRVILDEAQTIKNHRTLVARACCSLRAKRRWCLSGTPIQNAIDDLYSYFRFLKYDPYAVYKSFYNTIKIPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGEPIISLPPKTIELNKVDFSIEERAFYTQLEADSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYSSDFVGENSVEMAKTLPREMLVNLFNCLETIAICCVCNDPPEDPVVTMCGHVFCYQCVSEHMTGYDNMCPVADCKEPIGDVFSKATLRSCISGDLGNGSSSDSRLDYSVVQQSNYSSSKIRALLEILRLHCKLKSFSSSQTWEIENCDSDVSVTRRTTEGPLKAIVFSQWTCMLDLVEESLKESGIQYRRLDGTMTLVARDKSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILMDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIKDTVEDRILALQDEKRKMVASAFGEDQAGGTATRLTVDDLKYLFMV 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2251 1034 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 112 1033 - -
Bisa01g2251 1034 CDD SF2_C_SNF 835 986 - -
Bisa01g2251 1034 Pfam Helicase conserved C-terminal domain 880 976 IPR001650 -
Bisa01g2251 1034 MobiDBLite consensus disorder prediction 73 96 - -
Bisa01g2251 1034 Pfam SNF2-related domain 308 714 IPR000330 GO:0005524|GO:0140658
Bisa01g2251 1034 Gene3D - 273 368 IPR038718 -
Bisa01g2251 1034 Pfam Zinc finger, C3HC4 type (RING finger) 751 798 - -
Bisa01g2251 1034 MobiDBLite consensus disorder prediction 355 373 - -
Bisa01g2251 1034 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 399 488 - -
Bisa01g2251 1034 Gene3D - 528 638 IPR038718 -
Bisa01g2251 1034 Gene3D - 401 526 IPR038718 -
Bisa01g2251 1034 ProSiteProfiles Zinc finger RING-type profile. 752 789 IPR001841 -
Bisa01g2251 1034 MobiDBLite consensus disorder prediction 381 397 - -
Bisa01g2251 1034 SUPERFAMILY RING/U-box 746 809 - -
Bisa01g2251 1034 SMART ring_2 752 790 IPR001841 -
Bisa01g2251 1034 Gene3D - 652 1033 IPR027417 -
Bisa01g2251 1034 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 857 1029 IPR001650 -
Bisa01g2251 1034 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 320 599 IPR014001 -
Bisa01g2251 1034 CDD DEXDc_SHPRH-like 305 637 - -
Bisa01g2251 1034 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 518 649 - -
Bisa01g2251 1034 SMART helicmild6 893 976 IPR001650 -
Bisa01g2251 1034 MobiDBLite consensus disorder prediction 355 410 - -
Bisa01g2251 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 645 1033 IPR027417 -
Bisa01g2251 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 637 IPR027417 -
Bisa01g2251 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 739 801 IPR013083 -
Bisa01g2251 1034 MobiDBLite consensus disorder prediction 80 96 - -
Bisa01g2251 1034 SMART ultradead3 301 616 IPR014001 -
Bisa01g2251 1034 ProSitePatterns Zinc finger RING-type signature. 767 776 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2251 Bisa-ChrBisa01 40669393 40686905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2251 63 934 RAD5 or RAD16-like Gene Family AT1G50410 55.482 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa01g2251 SNF2_N 7.8e-68 CL0023