Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa01g2225 | ATGGCCGAACCACCGTCTCCGCCGCCAGAGCAGTCCTTGCCGGAAGCCGATGCTCTGCAGTACTGGTGCTACCACTGCGACAAGCGCGTGTCCGTGGAAACGCAGCCGAACCTACCTGACATTCTCTGCCGCGAGTGCAAGAATGGATTCGTGGAATCAATTCCTCCACTGGCTCCGCCTTCTGCGACGTCTGATCTGATCGACGATCCTCATTTAGGATCGCAGTTTCTACGCGTGCTTCGGCTGCTGGCCGAGTCAGCGCGTGACGACGACTCGCCCCCTCCGCCGCCGTCGCAGAACCGCTCCTCGGGCGATGATTTTCTCAGGGTTGAGCTCGATGAGTGGGATGACGATGAAGAGAGCAGCAACCACAACAACAACGACGAGGACGAAGATGACGACGGGGTGGAGTTTCACGACGAAGGAGAAGAAGAGCGCGATGATAACGAAGAGCATGAAGATCGACTGGGAGACGAGGACCCTAGTGGAGACGAATCCGAAGAAGATCTGCGAAGGAGGAGTATGCGGAACCGGATCAGAGAGTTGACAAGTCGGATCAGAGATTTGGCAACCGGCACGAGGAGCAGGAGGAACCGGATCTTGGATTGGGCTGATATACTGATGGGTCTGGAAGACAATTCCATTGAATTCAGACTTCAAATGCCGGATTCGGATCGGTTTTTCGGGAACCCAGGAGATTACGTCGATGCTGCTGATTATGAAGCTCTGCTGCTGACCATGGCTGAAAGTGATGGAAACGGGAGAAGAGGGGCTCCTCCGGCGGCGAAATCCGCGGTGGAGTCGTTGCCAACTGTGGAGATTGTGTCGGAGGATCAAGCTTTAGTGTGCGCTATATGCAAGGATATGGTAGGCGTGGGAAACATGTCAAAGAGATTGCCCTGTGGGCATCAGTACCATGGGGATTGCATAGTGCCCTGGTTGGGTTCTAGAAATTCATGTCCAGTTTGCAGGTTTGAGCTACCGACAGATGACCAGGAATACGAGGAAGAAAAGAAGAAGAGGGTGACTGCCACTGCTTCTAATGGGGCATCGGCTTCTGGTGGAACTGATTCAGTTTCGAATTGA | 1086 | 0.5414 | MAEPPSPPPEQSLPEADALQYWCYHCDKRVSVETQPNLPDILCRECKNGFVESIPPLAPPSATSDLIDDPHLGSQFLRVLRLLAESARDDDSPPPPPSQNRSSGDDFLRVELDEWDDDEESSNHNNNDEDEDDDGVEFHDEGEEERDDNEEHEDRLGDEDPSGDESEEDLRRRSMRNRIRELTSRIRDLATGTRSRRNRILDWADILMGLEDNSIEFRLQMPDSDRFFGNPGDYVDAADYEALLLTMAESDGNGRRGAPPAAKSAVESLPTVEIVSEDQALVCAICKDMVGVGNMSKRLPCGHQYHGDCIVPWLGSRNSCPVCRFELPTDDQEYEEEKKKRVTATASNGASASGGTDSVSN | 361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa01g2225 | 361 | MobiDBLite | consensus disorder prediction | 344 | 361 | - | - | |
| Bisa01g2225 | 361 | Pfam | zinc-ribbon | 20 | 54 | IPR039525 | GO:0061630 | |
| Bisa01g2225 | 361 | ProSiteProfiles | Zinc finger RING-type profile. | 283 | 324 | IPR001841 | - | |
| Bisa01g2225 | 361 | MobiDBLite | consensus disorder prediction | 331 | 361 | - | - | |
| Bisa01g2225 | 361 | FunFam | E3 ubiquitin-protein ligase RING1-like | 246 | 330 | - | - | |
| Bisa01g2225 | 361 | SUPERFAMILY | RING/U-box | 278 | 330 | - | - | |
| Bisa01g2225 | 361 | MobiDBLite | consensus disorder prediction | 87 | 106 | - | - | |
| Bisa01g2225 | 361 | MobiDBLite | consensus disorder prediction | 116 | 175 | - | - | |
| Bisa01g2225 | 361 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 127 | 328 | - | - | |
| Bisa01g2225 | 361 | SMART | ring_2 | 283 | 323 | IPR001841 | - | |
| Bisa01g2225 | 361 | Pfam | Ring finger domain | 283 | 324 | IPR001841 | - | |
| Bisa01g2225 | 361 | MobiDBLite | consensus disorder prediction | 116 | 165 | - | - | |
| Bisa01g2225 | 361 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 330 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa01g2225 | Bisa-ChrBisa01 | 39887631 | 39888716 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa01g2225 | 194 | 339 | C3H Transcription Factor Family | AT5G01980 | 48.366 | 5.11e-37 | 137 |