Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2208 ATGTCTTTCACCGGCGGCAGCAATCTTGGAGGCGGAACAAAACCGTTTTTCTGCCACAAATGCGAACGCAGAGTCAATGTACCGGTCTCTGATTCGGCCGACCCTTTCTGTCCACTCTGTTTGCAAGGCTTTCTTGAAGAAGAATTCGAAAACCCTAACCCTAATCCTTTTGCAGACCCAGATCCCTCTTTTGGCTTTGATCCTTTGTCCTTCCTCCCCCTCCTCTTGTCCTCTGCTTCTCGCTCTGGTAATCGACCCGATTTCGCGGATTCCGACGGGTTCGACCCTTTTCATTTTCTCCAGAACCACCTTCGAGATCTTCAGGCTGATGGTGCCAACGTCCAATTCGAGATCAATCATCCCTCGGAACAAGGATTTCGGCTACCAACCAATATTGGGGATTACTTTCTTGGTCCCGGCCTGGAGCAAGTGATACAGCAGCTCGCCGAGAACGACCCAAACCGTTATGGCACCCCACCTGCCTCGAAATCTGCCATACAGAATCTTCCAACTATCACCGTCACCGATGAATTGTTGAACTCGGAATTGAACCAGTGTGCGGTTTGTCAGGACGAGTTCGAGAAGGGTTCTCAGGTAAAGCAAATGCCTTGCAAGCATGTGTATCATGATGGGTGCTTGCTTCCCTGGCTCGAATTGCATAACTCCTGCCCGGTTTGTCGATATGAGTTACCCACGGATGACCCGGATCATGAGAACCCAGGTCATAGGGCCCAGGGGAATGCTAATGCGGGGTGGAGACCTTCTGGAAGTGCCAGCAGCAGCGGAGGTGGCAGCAGACCAGTTCAGAGGACTTTTAGAATATCTTTGCGGTATCCTTTTGGTTCCCGTGAGTCTACACAGGAGAGTAATGAAAGAGGATGGGGACGCATGCAAGAAGATTTGGATTGA 909 0.5083 MSFTGGSNLGGGTKPFFCHKCERRVNVPVSDSADPFCPLCLQGFLEEEFENPNPNPFADPDPSFGFDPLSFLPLLLSSASRSGNRPDFADSDGFDPFHFLQNHLRDLQADGANVQFEINHPSEQGFRLPTNIGDYFLGPGLEQVIQQLAENDPNRYGTPPASKSAIQNLPTITVTDELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHDGCLLPWLELHNSCPVCRYELPTDDPDHENPGHRAQGNANAGWRPSGSASSSGGGSRPVQRTFRISLRYPFGSRESTQESNERGWGRMQEDLD 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2208 302 SMART ring_2 186 226 IPR001841 -
Bisa01g2208 302 Pfam zinc-ribbon 16 47 IPR039525 GO:0061630
Bisa01g2208 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 38 231 - -
Bisa01g2208 302 Pfam Ring finger domain 184 227 IPR001841 -
Bisa01g2208 302 MobiDBLite consensus disorder prediction 236 302 - -
Bisa01g2208 302 MobiDBLite consensus disorder prediction 250 268 - -
Bisa01g2208 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 233 IPR013083 -
Bisa01g2208 302 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Bisa01g2208 302 SUPERFAMILY RING/U-box 165 234 - -
Bisa01g2208 302 FunFam E3 ubiquitin-protein ligase RING1-like 147 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2208 Bisa-ChrBisa01 39547269 39548177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2208 130 238 C3H Transcription Factor Family AT5G01980 46.789 6.33e-32 122