Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2179 ATGGGTTGCACTGTAAGGGATAAGCACTTCCGAGCGAATCGGAGACCTCGATCAACCAAACCCGATGCGGATTCCTGTTGTTATCTTGACAAGACTGCCATCTCCAAATCTATACTGGAATCAGGCCTGAAGCCGTTGAGAAACCATCTGGTTCTCGACGATCCCTCTCAAAATCCAAATTCTAGCTCAAATCCTAACCCTAACCCTAATTCTGCCCTTAATATTGAGGAAACCGGCTGGGGTTACTGCACCGAAGAACAATTAGAAGAAATTCTATTGAAAAACTTGGAATATTTATACAATGAAGCTGTTTCAAAGCTTGTTGCATTGGGCTACGACGAGGACGTTGCTATCAAAGCAATTTTGCGAAATGGCCATTGTTATGGTGGAATGGATGTGTTAACCAATATATTGCATAACTCGTTGGCTTATTTGAATAGTAATTGTGGTAGTAGTACAAGTGGTGGAAGTTGTAGTAATAATGGTAATCTGGATGAGTCCGATCCTGTTTTCTCAGACTTGAGGCAGCTGGAGGAGTATTCTCTGGCGGGTATGGTCTGTTTGCTGCAACAGGTCAGACCGCATTTGAGTAAAGGCGATGCTATGTGGTGTTTGCTTATGAGCGATCTTCATGTAGGACGGGCAAGCACAATGGAAATTCCAGTGCTTCCTGCTCCAGGCAATGGTTGTCCTGCTCCTAGTACCGCTGAGACTGTTAGCAATTCAACTGGTGTTTTGGCCCCAGCCCTATGTAGGTTTCATGGGGGTTGGGGATTTGGAAATGGGGGAGGCTCAGATCTCCCCGTGAATGGATTCTTCTCTTATGGTGCAGACATGACATTACAAAGAGATATTGAATTTCCCAAGAGGTTTAATCTTTCTCCTTCGATGAAGTCTTTATTGAAAAGAAACGTTGCAATGTTTGCGGCTGGTTTTAGAGCAAATTCAAAACAATTGCAGACACAAGCTAAGGCCTGTCCCAGCACTAGCACTTTTTCAAGTTTGGATTCTCCTGCTGTATCTGGGACTGATGTCCCAGCTGAGCAGTCTGGGGATTCTCAGAATTTAACTAACCAAGATGCTGTGAACTCAGTGCTGAGTAAATTTCGTGATCTAAATCTTGATGAGAATTTGGAGTTTGTGACAGAGGATCAGAAGGATGAGGTGATTGTCACTCTATTCCATCAGATTAAGGATCTTGAGAAACAGGTAAAGGAACGAAAAGATTGGGCCCATCAGAAGGCAATGCAAGCTGCAAGAAAGCTAAGCAATGATCTGACTGAGCTGAAAATGTTAAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCGCTTGAGGACACTACCATGAAAAGACTCTCAGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAAGTTGACCGTGCAAATGCAGCCGTGAGACGACTTGAGACAGAGAATGCAGAAATCAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAATCAGTCACAACTTGCTTGCAAGTTGCAAAAAGGGAGAAAAAGTGCTTAAAGAAGCTTCTAGCTTGGGAAAAGCAGAAAGCCCAGCTACAGCAGGAGATTTCAAGTGAAAAAGAGAAGATATTGAAGGTGCAGGAAGAATTGGTCCAGATTAAACAGCGTCAGAAAGATGCAGAGGTCAAGTGGAGAGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGGACTCGTTGAGGAGGAGCGATGCTCTAAGGAAGCAGCTGAGGCTAAAAATAAGAGGAAGCTTGAGGCTTTGCGCCTAAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTCCTAAGACTCGAGCAGGAGCTTTCACGCTTAAAGGCATCTGCTCAGTCTGCTGAGGTTCAACAGCAATCAAATACTTCACCTGCAAGTGAGTCTGAGGGTGCAAAGCCCCAGAGAGCGACAATTGCTAAGCTGCTTCAAGAATTAGATAAGCTGGAGGATTTTTCAGATAAAGAAGTCAATTGTGATAGGGAATGCATAATATGCATGAAGGACGAAGTGTCTGTTGTTTTCTTGCCTTGTGCACACCAGGTGATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAGGGTAAAGCTGCTTGTCCTTGCTGCCAGGTTCCAATTGAACAGAGGATTCGCGTCTTTGGGGCAAGTTCGTAG 2196 0.444 MGCTVRDKHFRANRRPRSTKPDADSCCYLDKTAISKSILESGLKPLRNHLVLDDPSQNPNSSSNPNPNPNSALNIEETGWGYCTEEQLEEILLKNLEYLYNEAVSKLVALGYDEDVAIKAILRNGHCYGGMDVLTNILHNSLAYLNSNCGSSTSGGSCSNNGNLDESDPVFSDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPVLPAPGNGCPAPSTAETVSNSTGVLAPALCRFHGGWGFGNGGGSDLPVNGFFSYGADMTLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQTQAKACPSTSTFSSLDSPAVSGTDVPAEQSGDSQNLTNQDAVNSVLSKFRDLNLDENLEFVTEDQKDEVIVTLFHQIKDLEKQVKERKDWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTTCLQVAKREKKCLKKLLAWEKQKAQLQQEISSEKEKILKVQEELVQIKQRQKDAEVKWREELKAKEEALGLVEEERCSKEAAEAKNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAEVQQQSNTSPASESEGAKPQRATIAKLLQELDKLEDFSDKEVNCDRECIICMKDEVSVVFLPCAHQVMCASCSDEYGRKGKAACPCCQVPIEQRIRVFGASS 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2179 731 CDD RING-HC_MIP1-like 674 726 - -
Bisa01g2179 731 Coils Coil 457 498 - -
Bisa01g2179 731 MobiDBLite consensus disorder prediction 53 71 - -
Bisa01g2179 731 SUPERFAMILY RING/U-box 667 723 - -
Bisa01g2179 731 Pfam Zinc finger, C3HC4 type (RING finger) 674 722 - -
Bisa01g2179 731 PANTHER OS05G0141500 PROTEIN 1 726 IPR046934 -
Bisa01g2179 731 Coils Coil 605 632 - -
Bisa01g2179 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 728 IPR013083 -
Bisa01g2179 731 MobiDBLite consensus disorder prediction 626 645 - -
Bisa01g2179 731 MobiDBLite consensus disorder prediction 328 358 - -
Bisa01g2179 731 MobiDBLite consensus disorder prediction 1 23 - -
Bisa01g2179 731 MobiDBLite consensus disorder prediction 49 71 - -
Bisa01g2179 731 ProSiteProfiles Zinc finger RING-type profile. 677 717 IPR001841 -
Bisa01g2179 731 Pfam Family of unknown function (DUF6592) 95 216 IPR046527 -
Bisa01g2179 731 Coils Coil 513 561 - -
Bisa01g2179 731 SMART ring_2 677 716 IPR001841 -
Bisa01g2179 731 MobiDBLite consensus disorder prediction 626 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2179 Bisa-ChrBisa01 38959238 38963173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2179 677 727 C3H Transcription Factor Family AT1G73950 43.137 3.02e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1291 11 31985932 31988935 Bisa01g2179 01 38959238 38963173 CCT