Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2162 ATGACTGACTGTGAGGGTCTTATCATATCACTTTTGAAGCCTTTTAGGTTTCAAGTGACAGGAAAATCCAGAAAATCTGATCTATGCGGCGCACTGTGCTCATTACCTACACACTTTGAAGGAGTTGCAGCAATAGTGGATTTGGCAACTGGTGATTTCACTGATAAAGCGTTTAAGACGAAAAGTCCCAGTCTGTGCTCGTCTAATGATGGCATTCTGCTCTCACCTTGGTTGAGTAGTGCAAGTGATTGTTGGCAGCATACTAGCACCAAGGCAAGTAACAATTTTAGTGTGTCTCTGAGTCATGGCTCTTTCTTGGAAAATGCAGTAAATGCTGATGCTCATACAAAAAATGTGTCTTGCAGTTTGGCTTCGATTGATTCCTTTTCTGCATTTGAAAAGGATGTAAATGAGATACTTATAGATGGTGTCTACAATGATGCCACATCAGGGAGAGAGAATTCTCGTTTAAATTGTGAAGACACAGCAGTTCAAACTAAAAGGCATTCATCCTGTAAGAAGCATCTGCAGAAGTTTGTGTGGGTAATTGATAACAGCACTATGAAAGAATCTATGAAATCTCAGCCGGCAGAACCTAGGGTTGTATCAGACTTATCTGATGAGGTTAGAGTTTGCGATACCTGTGGCGATGCAGGGCAGGAGGAATTACTTGTGCTTTGCAACATGTGTACTGATGGGGCAGCGCACACTTATTGTATGCGTGTTAAGCTGGACAAGGTTCCTGAAGGTGACTGGATTTGTGAAGATTGCATGCTAAGGATAGACACTGAGAAAGCAGTGCAAGACAAAGTTGAAGAAGCTACCGGAATATCAAAAGAACATCCAGAGTTCCAAAAATCCAAAAGCAGTTCAAAACTAAAATTTAGATCTTCATCTGCTGTGAGAAGGAAAAGGGAAGGGGATGGTTTCTCAGCTGTTAAAGAGAGATTAAAGGTGTCTGGTTCATGCAGGGGAAATTTTGTTACACACAGCAGTCAGAAGCCCGCCAATTTTTGTGGTGGAGTTCAAGCACACTTGTCAACTTGTGCATCACCCAAAGTTCTTGAAATGGTGGACAAGTTTCCTGATATGATTATGCTGGATGAACTACCTCGCTTGAGGATGTGGCCATCTCAATTTATAGAAAGTGATCCCACAGAACAAAATATAGCTCTCTACTTTTTTGCGAAAGATCTTAATAGTGCAACACCAAGTGATGGCTTTGTGGAAAATAATAATGCTTACAATGGTGAGCCATCAGGATCTTCATTTGATGTGCAGAATTTGGAGGAGCATGAGAGGGAAGCCATGGAGATTTTGGCTTCCCTTTCGAAAGGCTACCAAAAAGTAGTTTTTGAATAG 1362 0.4141 MTDCEGLIISLLKPFRFQVTGKSRKSDLCGALCSLPTHFEGVAAIVDLATGDFTDKAFKTKSPSLCSSNDGILLSPWLSSASDCWQHTSTKASNNFSVSLSHGSFLENAVNADAHTKNVSCSLASIDSFSAFEKDVNEILIDGVYNDATSGRENSRLNCEDTAVQTKRHSSCKKHLQKFVWVIDNSTMKESMKSQPAEPRVVSDLSDEVRVCDTCGDAGQEELLVLCNMCTDGAAHTYCMRVKLDKVPEGDWICEDCMLRIDTEKAVQDKVEEATGISKEHPEFQKSKSSSKLKFRSSSAVRRKREGDGFSAVKERLKVSGSCRGNFVTHSSQKPANFCGGVQAHLSTCASPKVLEMVDKFPDMIMLDELPRLRMWPSQFIESDPTEQNIALYFFAKDLNSATPSDGFVENNNAYNGEPSGSSFDVQNLEEHEREAMEILASLSKGYQKVVFE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2162 453 SUPERFAMILY FYVE/PHD zinc finger 200 262 IPR011011 -
Bisa01g2162 453 PANTHER - 209 299 - -
Bisa01g2162 453 MobiDBLite consensus disorder prediction 276 290 - -
Bisa01g2162 453 MobiDBLite consensus disorder prediction 276 300 - -
Bisa01g2162 453 Pfam PHD-finger 211 258 IPR019787 -
Bisa01g2162 453 SMART PHD_3 211 258 IPR001965 -
Bisa01g2162 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 274 IPR013083 -
Bisa01g2162 453 ProSiteProfiles Zinc finger PHD-type profile. 209 260 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2162 Bisa-ChrBisa01 38547172 38555583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2162 211 259 C2H2 Transcription Factor Family AT3G01460 36.735 1.33e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa01g2162 PHD 3.2e-08 CL0390