Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2159 ATGTCCTTGCGAATCGCAGAAGCATCAACGAATCATAGGAGAATAGCATTCACCGATTCACATTCACTTGAGGTTGAGCTGTTGAGGAATAAAATTTCCAAAGAGATGAGTCATGGACAATCTCCTACTATAGATACAGATGGCACCATTGAGATCAAATCATGGCAGGTCCAGTCCTGTGAGATTGAGGCTAGTTTTGGAGGAAATTTGAACTCTTGCATATCAATGGACCCGTTCTTTTCCTGGTTATCTGATTTGGAAATGGATGACTGCGATTTGTTTGCTACGCAGTCCGTCGATGATGATCAGTTTCTTTCACATGACATAGCCAGCCTCCTGCCTTGCGAAACCTACTCTTTCTATAACACTTGTCCTTCCAAAACTGTGAGCAATTCATCCACTGCTGAAACCAGTCTTAACAATAGTTGGAACTCCACCATCTCCGACCATTCTTCTTCATCTCAGCTTCTATCTTTTGAGAACTCTATCTCTAACTCGTCCCATTATCCCAACGACAATTACTTTCGGGGCTTTCACTCGGCCTTGAAGCCTACAAATAAGGAGGTGGTGCATCATCAGTCCCCTGCAGATATGCAGTATTTCTCGGCTCAATCTCCCATGGGGTCTTCCCAAAATCAAAACTTTGAAGCCAAACCCACCCAAGAGACCAACAGGCCTGTCCCTCTGGTTCGTGATCACATCATGGCCGAGAGAAAACGCAGAGAAAAGCTCAGCCAGCACTTCATTGCTCTTTCAGCCCTCGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCAGTACTTGGGGACGCCATAAAGTACGTGAAAGAGCTGAAGGAGCGTCTAACAATGCTGGAAGAACAGAACAAGAGAAGGAGGGTGGAGTCGGCGGTGAGGGTGAGGAAATCGCAGGTATGGAGGGACGACGATTTGAGTTCGAGTGAGGAGAATACAAATGCAGTAAGCGAAGCAAAGACGCTGCCGGAAGTGGAAGCCAGAGCGTCGGAGAAGGAGGTGCTGCTTCGGATCCACTGCCAGAAACACAAGGGCATTTTGGTCAAAATACTCGCCAAGATTCAAAGCCTCCACCTGCTTGTCGTCAATAGCAGCGTTCTGCCATTTGGGGATTCCAATCTTGACGTAACTATCATCGCTCAGATGGGAGAAGGTTACAGCTCGACGATGAAGGATCTTGTGAAAAGCCTGCGAGTGGGTATACTAAGCGCAAGTGGTTTTGATACTGTTTTTAAGGAAGCAGCAAGTGATTGGAGTTTCATTCTGGAGCCTGATGAATTAGGCAGTGTATTACAGGAGGATATTAACTATGAAAGTTGCTTCGGTACAGATACCTTCAACACCGAAAATGGCATCGAAATGGCAGTTTCAAGCTCAAATTCAAACTCTGCCATCATTCACAATTCCGTTGATGTCTCCAAGAACAGGGCTTCTCAAGCTGATTCTAGTAAGTTGATGCTAAAGAGGCGCTTCCAAGGCCAAAGAGAGGACAAGAGGAACAGCTCAGTGGGCACAAGCACAAGTCATCCTCCACCACCATCACATCACATAATTGCTGAGAGATTGAGGAGAGAAAAGATCACACAACGCTTCATTGCTCTTTCAGCCCTCATTCCTGGCCTCACAAAGGTGGACAAGGCGTCTGTGCTGGAGGAGGCTATAAGGTATGTGAAGGAGCTGCAAGAGCAAGAGAAAGTGCTGGAAGAACAGAGGAAGAAGAAGAAAGGCGTAGAATCAAAGGTAGAAGCCAGGGTTTCAGAGAGGAATGTTCTGATTCGAATCCAATGCGAGAAACAGAAAGGATCGGTGGTGAACATAATCACAGAGATAGAGAAGCTTCGTCTCTTAGTGCTGAGTAGCAGTGTGATGCCATTCGGGACATCCATTCTTGACATAACCATCATAGCTCAGATGGAGGATGAGTTCAACTTGAGCATGAAGGAGCTCTCTACAAACCTGAGGGAGGCACTATCGCAATTAATGGAACGTACAGGTGTCTTGTAA 2016 0.4633 MSLRIAEASTNHRRIAFTDSHSLEVELLRNKISKEMSHGQSPTIDTDGTIEIKSWQVQSCEIEASFGGNLNSCISMDPFFSWLSDLEMDDCDLFATQSVDDDQFLSHDIASLLPCETYSFYNTCPSKTVSNSSTAETSLNNSWNSTISDHSSSSQLLSFENSISNSSHYPNDNYFRGFHSALKPTNKEVVHHQSPADMQYFSAQSPMGSSQNQNFEAKPTQETNRPVPLVRDHIMAERKRREKLSQHFIALSALVPGLKKMDKASVLGDAIKYVKELKERLTMLEEQNKRRRVESAVRVRKSQVWRDDDLSSSEENTNAVSEAKTLPEVEARASEKEVLLRIHCQKHKGILVKILAKIQSLHLLVVNSSVLPFGDSNLDVTIIAQMGEGYSSTMKDLVKSLRVGILSASGFDTVFKEAASDWSFILEPDELGSVLQEDINYESCFGTDTFNTENGIEMAVSSSNSNSAIIHNSVDVSKNRASQADSSKLMLKRRFQGQREDKRNSSVGTSTSHPPPPSHHIIAERLRREKITQRFIALSALIPGLTKVDKASVLEEAIRYVKELQEQEKVLEEQRKKKKGVESKVEARVSERNVLIRIQCEKQKGSVVNIITEIEKLRLLVLSSSVMPFGTSILDITIIAQMEDEFNLSMKELSTNLREALSQLMERTGVL 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2159 671 Gene3D - 228 294 IPR036638 GO:0046983
Bisa01g2159 671 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 515 564 IPR011598 GO:0046983
Bisa01g2159 671 PANTHER BHLH TRANSCRIPTION FACTOR 83 406 - -
Bisa01g2159 671 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 518 576 IPR036638 GO:0046983
Bisa01g2159 671 SMART finulus 521 570 IPR011598 GO:0046983
Bisa01g2159 671 SMART finulus 234 283 IPR011598 GO:0046983
Bisa01g2159 671 CDD bHLH_AtNAI1_like 229 302 - -
Bisa01g2159 671 MobiDBLite consensus disorder prediction 502 516 - -
Bisa01g2159 671 Pfam Helix-loop-helix DNA-binding domain 519 565 IPR011598 GO:0046983
Bisa01g2159 671 Pfam Helix-loop-helix DNA-binding domain 233 277 IPR011598 GO:0046983
Bisa01g2159 671 Coils Coil 554 584 - -
Bisa01g2159 671 Gene3D - 516 588 IPR036638 GO:0046983
Bisa01g2159 671 Coils Coil 267 294 - -
Bisa01g2159 671 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 295 IPR036638 GO:0046983
Bisa01g2159 671 MobiDBLite consensus disorder prediction 496 519 - -
Bisa01g2159 671 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 228 277 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2159 Bisa-ChrBisa01 38493814 38503841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2159 520 665 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.944 3.27e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa01g2159 HLH 4.4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1308 11 32236811 32238043 Bisa01g2159 01 38493814 38503841 CCT
Bisa01g2159 01 38493814 38503841 Bisa01g2159 01 38493814 38503841 ECH