Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2158 ATGAAGCGTGTATGCTTCCCCTCCTCCAAACCCCTCTCTATAACTAATCATTCACAATTTGCTCTTCTCATTATCTCGATCTGCTTCGACTTCAGAAACATCCTCAGCATCCACCGCTCTTCCTTTAATTTCTTCTTTCAAGCTCACACCCTCTCTCCTCTGCATCAAATCAACAAAATTCAGATGATGGAATTATCGCCCACCATGTACATAACTGCTGATCTGGGAATATTGGAGGATCCCACCTTGTACCAAGATTTCCCGACGGATTCTCTGGGGTACCAGGTTGACCATGGGCTTGATTTCCAGTCCTTCTCGTACGAGTGTCCCAGCTCCAGAAGAAGTGCAGAGGGTTATTGGGTCCCTGTGGAAAGTCCAGAATCGGTGGCCCCACCAGCACCGACGCCATCAGCGAAGCAGCTCAAGACGGAGGCTTGTGTTGTTTCTTCATCATCCCCACAACTCATTTCATTCCAGGACTACAATAATGCATCTTCCCGCCAATTTTACGATTCCAGTATGAAGCTGGAAGCGGAGACCCTGAATATTGGGTGTAATGAAAACCTGTTGGATTTTGCGTCTCTCGGCTCTCAGTTCGGAGAATGTGAGAAGCAGAGGACGAACAAGGGAAGCACCATGACTAGGAGTGCCGTTCAAGCTCAGGATCACGTAATGGCTGAAAGAAAACGACGTGATAAGCTCAACCAGAGATTCGTTGCTCTCTCCGCTATCATTCCTGGCCTCAAGAAGATGGACAAGGCGTCAGTGTTGGGAGATGCTATAAAGTATGTGAAGCAACTGCAGGAACGCGAGAAGGTTCTGGAAGAACAGGTGGCGATGAAGACGGTGGAATCAGCGGTGTTATTGAGGAGAACCGCCGTCTCTGCCGATAGCTCCGACGACGACGAAAATTCCGACGACCCCTCCCACCTGTCACTCCCTGAAATCGAAGCTAGAGTTTTGGGTAAAGACGTACTCATCACAATCCACTGCCACAAACACAACGGGCTTGAAGCTGCAATACTCGCCCAATTACAAAACCTCCGTCTCACTGTTCAGAGTAGCAGCGCTTTAGCCTTTGGGAAAACCACCCTTTGTATAACTATAGTAGCTCAGCAGATGGAGAAGGAACACTGCATGACAGCGAAGGATTTAGTAAAGAGCCTAAGGAAGGCATTGGGACAGTTACATAGTTCAGTTTAA 1203 0.4821 MKRVCFPSSKPLSITNHSQFALLIISICFDFRNILSIHRSSFNFFFQAHTLSPLHQINKIQMMELSPTMYITADLGILEDPTLYQDFPTDSLGYQVDHGLDFQSFSYECPSSRRSAEGYWVPVESPESVAPPAPTPSAKQLKTEACVVSSSSPQLISFQDYNNASSRQFYDSSMKLEAETLNIGCNENLLDFASLGSQFGECEKQRTNKGSTMTRSAVQAQDHVMAERKRRDKLNQRFVALSAIIPGLKKMDKASVLGDAIKYVKQLQEREKVLEEQVAMKTVESAVLLRRTAVSADSSDDDENSDDPSHLSLPEIEARVLGKDVLITIHCHKHNGLEAAILAQLQNLRLTVQSSSALAFGKTTLCITIVAQQMEKEHCMTAKDLVKSLRKALGQLHSSV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2158 400 Coils Coil 264 284 - -
Bisa01g2158 400 CDD bHLH_AtNAI1_like 220 291 - -
Bisa01g2158 400 SMART finulus 224 273 IPR011598 GO:0046983
Bisa01g2158 400 Gene3D - 208 282 IPR036638 GO:0046983
Bisa01g2158 400 Pfam Helix-loop-helix DNA-binding domain 221 268 IPR011598 GO:0046983
Bisa01g2158 400 PANTHER BHLH TRANSCRIPTION FACTOR 137 393 - -
Bisa01g2158 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983
Bisa01g2158 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 291 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2158 Bisa-ChrBisa01 38450001 38451710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2158 125 396 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.091 2.36e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa01g2158 HLH 4e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa01g2158 01 38450001 38451710 Bisa01g2158 01 38450001 38451710 ECH