Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2106 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCACTAAAAGCTGGAGTAGTCAAACATGGGGCGGGAAAATGGCGTACTATACTTACTGACCCAGAGTTCAGTACCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCAATTTGGGGATCTAGGCAGAAGGCAAAGCTTGCACTTAGAAGGAATCTTCCAACCCCTAAAAATGATAATAACCATTTTTCCTTGAGCACCACAGTTCAACGTGATGAACAAGTTCCAGATACTAAGCCCCAAGCAGTTTCTGGTGGAACATTGCAACCTGCTAATTCAAAACGACAAATATCAAGGTTAGATAATCTTATATTAGAGGCTATTATCAATTTGAAGGAGCCAAAGGGTTCTGATAGGGCTGCCATTGCTACATACATAGAGGATCAATGCTGCTCTCCACCAAACCTGAGAAAGATATTGTCCACAAAACTGAAGCATATGGTGGCAAGTGGCAAATTAATAAAGGTGAAGCATAGGTACAGAATTACACCAGGCTCAACATTTTCTGAGAAAAGAAGATGCTCTTCCTCGTTACCTCTGGAAGGTAGGCCCAAAGATTCTACAAAAGCAGAAAAGAATGATGTCAATATCCTTTCCAAATCCAAAATTGATGCGGAGCTATCAAAAGTGAAGGGCATGACTGCACAAGAGGCCGCTGCTGCTGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCAGAGGCCGAGGCTGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCACGAGTGTTTGCAAAAGCAGCAATGAAGGCACTAAAATGCAAATCACTTCATATTTGATGGTGTGAACTCCTGCAATATTGTCAGCCGCAGTCAGTACATTGGCTTGAGATCAGAGTTCTGCTGTAA 954 0.4382 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSTILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALRRNLPTPKNDNNHFSLSTTVQRDEQVPDTKPQAVSGGTLQPANSKRQISRLDNLILEAIINLKEPKGSDRAAIATYIEDQCCSPPNLRKILSTKLKHMVASGKLIKVKHRYRITPGSTFSEKRRCSSSLPLEGRPKDSTKAEKNDVNILSKSKIDAELSKVKGMTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAARVFAKAAMKALKCKSLHIXWCELLQYCQPQSVHWLEIRVLL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2106 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Bisa01g2106 317 SUPERFAMILY "Winged helix" DNA-binding domain 117 196 IPR036390 -
Bisa01g2106 317 CDD H15 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa01g2106 317 SMART sant 4 59 IPR001005 -
Bisa01g2106 317 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bisa01g2106 317 Gene3D - 116 197 IPR036388 -
Bisa01g2106 317 CDD SANT_TRF 6 57 - -
Bisa01g2106 317 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Bisa01g2106 317 Coils Coil 242 276 - -
Bisa01g2106 317 PANTHER SINGLE MYB HISTONE 4 1 290 IPR044597 GO:0003691
Bisa01g2106 317 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa01g2106 317 FunFam Telomere repeat-binding factor 1 2 58 - -
Bisa01g2106 317 Gene3D - 2 59 - -
Bisa01g2106 317 Pfam linker histone H1 and H5 family 124 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa01g2106 317 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bisa01g2106 317 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2106 Bisa-ChrBisa01 37204358 37208640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2106 1 296 Single Myb Histone (SMH) Gene Family AT5G67580 57.191 1.39e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa01g2106 Linker_histone 1.1e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1351 11 32825491 32831247 Bisa01g2106 01 37204358 37208640 CCT