Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g2005 ATGTGGGATCTTAACGGCTGGCCCGATCAGAGAAACGACAACGAATCGGAGGGGTGTTCTTCCAACAAAGGGAAGCGGGTCGGATCTGTGTCGAATTCGAGCTCTTCGGCGGTGGTAGTGGAGGACGGATCGGCGGAGGAAGAAGCGGAGGGGAGCAGAGGATTGGGAATAATAAAGAAGCGAAGCAGTAAGATATTTGGGTTCTGCGTGACCCATGAGGAGTCCACGGCTAGCACCGAGGCCGACCCGCCTGTAATTACCCACCAGTTCATGCCAGTGGAGGAGGCTGACGTGGCGGGCGGAGGAGGGAGCAGCCCAGGCTTCCCGCGGGCCCACTGGGCGGGCTTGAATTTCTGCGAATCAAAACCACTCGGAGGCGGGAAATCGGGGGAAGTCGGGCCGTCGCTGCCCATGACGAAGAAGAGCCGGCGAGGCCCACGGTCGAGGAGTTCACAGTATAGAGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCTGCTGCACGTGCATATGATAGAGCGGCCATAAAGTTTCGGGGTGTGGAGGCGGACATAAATTTCAGCATCGAAGATTATGAAGATGACTTAAAACAGATGGGCAATCTGACGAAGGAGGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGGTTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTAGGCAAAAAGTACGTTTATCTGGGTCTATTTAACACCGAGATCGAAGCAGCAAAGGCTTATGACAAGGCAGCACTCAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCACCATTTATGAGAACGAGCACAACTCCGAACCCTTGGGTAACGCTGATCACAATCTGGACTTGAGTCTGGGGAATTCGAGCTCAAATGCCGCGATTGGGGGATTCAAACCCGAGTTCAATCCGGTCCCAGACCAATGTAATAGAATCAGAAGCAGCATGGAATCTCATGGAAACGAGGGCGAGACTTTGCGTCTGCTAAGCCATTCTCCAGCCACTGATGAATCTCAAACATATGGTCCATTCGCAAACCTTCACAGTAATCTTAATCTTGCACATTTTCACCAGCCAAATTTTCGTGGTCCCAGCGGCAGTCATGGAAACGACGGTCGTTTTGGAAGTGATCTTTCACTGTCAGTGAACGAACGTCTTTTAACATCTGCTGCAGCATCATCAGGATTCCCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCCTCTCATGAGACCCTCTTGA 1362 0.5117 MWDLNGWPDQRNDNESEGCSSNKGKRVGSVSNSSSSAVVVEDGSAEEEAEGSRGLGIIKKRSSKIFGFCVTHEESTASTEADPPVITHQFMPVEEADVAGGGGSSPGFPRAHWAGLNFCESKPLGGGKSGEVGPSLPMTKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFNTEIEAAKAYDKAALKCNGKEAVTNFDPTIYENEHNSEPLGNADHNLDLSLGNSSSNAAIGGFKPEFNPVPDQCNRIRSSMESHGNEGETLRLLSHSPATDESQTYGPFANLHSNLNLAHFHQPNFRGPSGSHGNDGRFGSDLSLSVNERLLTSAAASSGFPQGWLQKNGFHTPLMRPS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g2005 453 ProSiteProfiles AP2/ERF domain profile. 152 208 IPR001471 GO:0003700|GO:0006355
Bisa01g2005 453 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 99 333 - -
Bisa01g2005 453 ProSiteProfiles AP2/ERF domain profile. 244 301 IPR001471 GO:0003700|GO:0006355
Bisa01g2005 453 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
Bisa01g2005 453 MobiDBLite consensus disorder prediction 9 40 - -
Bisa01g2005 453 FunFam AP2-like ethylene-responsive transcription factor 243 303 - -
Bisa01g2005 453 SUPERFAMILY DNA-binding domain 243 302 IPR016177 GO:0003677
Bisa01g2005 453 SMART rav1_2 244 307 IPR001471 GO:0003700|GO:0006355
Bisa01g2005 453 SMART rav1_2 152 214 IPR001471 GO:0003700|GO:0006355
Bisa01g2005 453 MobiDBLite consensus disorder prediction 126 153 - -
Bisa01g2005 453 CDD AP2 243 303 IPR001471 GO:0003700|GO:0006355
Bisa01g2005 453 CDD AP2 152 207 IPR001471 GO:0003700|GO:0006355
Bisa01g2005 453 Gene3D AP2/ERF domain 151 210 IPR036955 GO:0003700|GO:0006355
Bisa01g2005 453 Gene3D AP2/ERF domain 243 302 IPR036955 GO:0003700|GO:0006355
Bisa01g2005 453 MobiDBLite consensus disorder prediction 1 53 - -
Bisa01g2005 453 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Bisa01g2005 453 Pfam AP2 domain 243 292 IPR001471 GO:0003700|GO:0006355
Bisa01g2005 453 FunFam AP2-like ethylene-responsive transcription factor 151 210 - -
Bisa01g2005 453 PRINTS Ethylene responsive element binding protein signature 245 256 IPR001471 GO:0003700|GO:0006355
Bisa01g2005 453 PRINTS Ethylene responsive element binding protein signature 283 303 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g2005 Bisa-ChrBisa01 35360921 35363251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g2005 1 453 AP2-EREBP Transcription Factor Family AT4G36920 54.786 2.33e-138 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bisa01g2005 AP2 1.3e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1470 11 34566690 34569354 Bisa01g2005 01 35360921 35363251 CCT
Bisa01g2005 01 35360921 35363251 Bisa01g2005 01 35360921 35363251 ECH