Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1988 ATGGAGCAGCGAAAACTTGTGGTTTTAGGTATTCCTTGGGAAGTCGATACTGAGGGCTTGAGAGAATATATGAGCAAGTTTGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGATCAACTGGCCGGTCTCGTGGTTTTGGATATGTCACATTTGCTTCAGTTGAGGATGCCAAGAATGCATTATCAAGTGAACATGTTCTTGGAAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTAAAAAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACCATCTGTAACTGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTATACATGCCAAAGGATCAAGGGTCCAAATCACACCGTGGGATTGGTTTTATAACTTATGCCAGTGCAGAATCTGTAGAGAATTTGATGACAGATAGTCATGAACTGGGAGGCTCTACTGTTGTGGTTGATAGAGCAACACCTAAGGAAGATGATTTCAGGCCAATTGGAAGAATGTCACAGTCACAGGGAGGGTATGGTGCATACAATGCATATATATCTGCAGCAACTAGATATGCTGCACTTGGAGCTCCTACTTTGTATGACCACCCTGGCTCAGTTTATGGAAGGGGAGAACCGTCTCGTGGAATGGGCAAAAAGATTTTTGTTGGCCGTCTTCCTCCAGAAGCAACAGCCGATGATCTTCGGCAGTATTTTGGCAGATTTGGCCGTATATTAGATGTATATGTTCCCAAGGATCCTAAAAGAGCAGGCCATAGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTGGCAGATCGGGTCTCTCGAAGGTCTCATGAGATTTGTGGACATCAGGTTGCAATAGATTCAGCCACACCTCTTGATGACGCTGGGCCCAGCGGGAATTTTATGATGAGTAGTGTGGATTCTTTTGGGGGATATGGCGGTCCTATGCGCACCTACGGGAGGATGTATGGTAGCCTGGATTTTGATGATTGGGGTTATGGAATTGGCGGTGGGAGACCATCAAGGGCTGATTGGAGGTATAGGCCATACTAG 1086 0.4475 MEQRKLVVLGIPWEVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVEDAKNALSSEHVLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGDITDLYMPKDQGSKSHRGIGFITYASAESVENLMTDSHELGGSTVVVDRATPKEDDFRPIGRMSQSQGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRGEPSRGMGKKIFVGRLPPEATADDLRQYFGRFGRILDVYVPKDPKRAGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPLDDAGPSGNFMMSSVDSFGGYGGPMRTYGRMYGSLDFDDWGYGIGGGRPSRADWRYRPY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1988 361 Gene3D - 1 85 IPR012677 -
Bisa01g1988 361 SMART rrm1_1 227 298 IPR000504 GO:0003723
Bisa01g1988 361 SMART rrm1_1 5 76 IPR000504 GO:0003723
Bisa01g1988 361 SMART rrm1_1 93 164 IPR000504 GO:0003723
Bisa01g1988 361 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Bisa01g1988 361 FunFam RNA-binding family protein isoform 1 223 306 - -
Bisa01g1988 361 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Bisa01g1988 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 302 IPR000504 GO:0003723
Bisa01g1988 361 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 225 321 - -
Bisa01g1988 361 SUPERFAMILY RNA-binding domain, RBD 89 189 IPR035979 GO:0003676
Bisa01g1988 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Bisa01g1988 361 Gene3D - 224 306 IPR012677 -
Bisa01g1988 361 Gene3D - 86 193 IPR012677 -
Bisa01g1988 361 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Bisa01g1988 361 SUPERFAMILY RNA-binding domain, RBD 226 326 IPR035979 GO:0003676
Bisa01g1988 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 159 IPR000504 GO:0003723
Bisa01g1988 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 65 IPR000504 GO:0003723
Bisa01g1988 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Bisa01g1988 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1988 Bisa-ChrBisa01 34936240 34942236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1988 17 274 Eukaryotic Initiation Factors Gene Family AT2G36660 24.809 9.50e-14 70.5