Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1975 ATGGCCGGTCAAGAATCCCCAATTCCTGTGTCGCCGGGGCAAAAGGTGGACGACGAATCAGAGGATAACTTAACCTTGGCTCAGTGGTCCAAGTCTCCTTTAATCCCGGACAAACAAAACAAGACGTTGGAGAATAAACACAAGCTCCTGACCAATAAGAAGAGAGCAGAGCATTTGGATTCTATAACTAAGAAAGTTGCATCTGGTCAGGCACGGAATAAATTTGCGAGCTCCACTAATGTTGAAGTGACATCATCTCGTGGCAAGGCCAAGTCATCTGCTGTGATTCGAGCACAAAAGGTCCAATCAAATTTAGAACCGGAATTCCCTAGTTTTGTGAAGTCATTAGTCAGATCAAATGTCACTAGTTGTTTCTGGATGGGCCTCCCAGGATCATTCTGTAAAAGCTACTTGCCAGAAAAGGATACAACGATCACTCTGGAAGATCAATCTGGGAAAGAGTACCAGTTGAAATATATTGCTTATAAGACAGGATTAAGTGCTGGTTGGAGACAGTTTTCTATTGCGCACAAATTGCAGGAGGGAGATGTTTTGGTCTTCCAATTGGTTAGACCTACAAAATTTAAGGACTCGTTGCAAGTGAAGGTTATCTCTGAGAATTTGGCCTTTTCATCCGCGAATTCCACGGACCCTTTAGTGCTTCAAAGATTGTTGATTTGCCAAAAGAGTATAAAAAGGTGGCTATTTGATAAAGTAAATGCAAATACTCACGATGCTGCAGCTTCGACTAGCTCAAAGAGAGGACCTGATAAATCTGCCTCAGTACTTGTCCCAAAGAAGAAAAGGACTGGTCTATCAAGATTGGCTCCTAAAGCTAGGCAGTCTGCAGAACAATCTGAGAATGATGGCGAGGAAGTTCGTTCAGAAGTATCAGAGGGCCTTAAACCAATGCTTGATTTCAAAGATGTGAAGGGTTTCAAAAATTTCAGCATCATAATCAATGGAAAGCCAATAGATGCTGAAATCCCTTTCGAGGTCCGAGGCAATGAAAATATTCATAGCATAGTTTGGAATGGCTTGTTTTGCTCCGAGAAGTCATGA 1062 0.4228 MAGQESPIPVSPGQKVDDESEDNLTLAQWSKSPLIPDKQNKTLENKHKLLTNKKRAEHLDSITKKVASGQARNKFASSTNVEVTSSRGKAKSSAVIRAQKVQSNLEPEFPSFVKSLVRSNVTSCFWMGLPGSFCKSYLPEKDTTITLEDQSGKEYQLKYIAYKTGLSAGWRQFSIAHKLQEGDVLVFQLVRPTKFKDSLQVKVISENLAFSSANSTDPLVLQRLLICQKSIKRWLFDKVNANTHDAAASTSSKRGPDKSASVLVPKKKRTGLSRLAPKARQSAEQSENDGEEVRSEVSEGLKPMLDFKDVKGFKNFSIIINGKPIDAEIPFEVRGNENIHSIVWNGLFCSEKS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1975 353 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 61 207 IPR044837 -
Bisa01g1975 353 Pfam B3 DNA binding domain 112 196 IPR003340 GO:0003677
Bisa01g1975 353 ProSiteProfiles B3 DNA-binding domain profile. 112 207 IPR003340 GO:0003677
Bisa01g1975 353 Gene3D - 89 207 IPR015300 -
Bisa01g1975 353 MobiDBLite consensus disorder prediction 1 23 - -
Bisa01g1975 353 SUPERFAMILY DNA-binding pseudobarrel domain 107 195 IPR015300 -
Bisa01g1975 353 SMART B3_2 112 207 IPR003340 GO:0003677
Bisa01g1975 353 MobiDBLite consensus disorder prediction 274 297 - -
Bisa01g1975 353 CDD B3_DNA 110 196 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1975 Bisa-ChrBisa01 34813274 34816921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1975 91 196 B3 DNA Binding Superfamily AT5G42700 51.887 1.97e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bisa01g1975 B3 2.4e-17 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa01g1975 01 34813274 34816921 Bisa01g1975 01 34813274 34816921 ECH