Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1904 ATGGCTTCTCCCTTGCATGCAACACTCCCTACCACAACAACCACTAACTATTCCATACTATATAATCCCTTCCCCTCCACTCCCACTACTGCAATATCTAAACACTCCTTGAAATTAATTCACCTAACAAGAACGATCGAGAAATATATCGGTAAGTCAAGAATGGGTTCTCAGGACATAACAGCCATCATATTGGGTGTCATAATTGCGAGTATTTTGGGTACGAACCTGAGCGAAGCGAAGGAATCCAAGATTCATGGGTTGAGAATGAATGAGATTGATCGATGCTGGAGAGGGAACCCTGAATGGCGGAGGCACAGGACTCAACTAGCCACGTGCTCCGTGGGCTATGCGGGCAAGATGACCAATAACATTGGGAACGACCTCGTCCACTATAAAGTCACCGACCCGACTGACGATCCAATTAACCCGAAACCCGGCACGTTGAGATACGGAGCATCCATGATCCAAGGCAAAGTGTGGATCACGTTCCAGAGAGACATGCACATTAAGCTGGCTAGACCCCTCCTCATCAGCAGCTTCACCGCCATTGATGCCCGAGGCGTCCACGTTCACATCGCTCATAATGCTTGCTTGATGGTCTACAAGGCAAGCAACGTAATAATACATGGGCTTCGGATCCATCACTGCAAGCCTCAAGGAGCAGGGATGGTGGTGGGGGGTGAAGCGAAGGTGATATCTCTGAGTCAGGTGGACGGAGACGCCATCAGATTGGTGACCGCTTCAAAGGTTTGGATTGACCACAACACGCTCTACAGCTGCCAAGACGGCCTTCTCGACGTCACCAGGGGCTCCACCGACGTCACCGTATCCAACAACTGGTTCAGAGAGCAGAACAAGGTCATGCTTCTCGGCCACGACGATGGCTACCTCAGAGACCAGAACATGAAGGTTACCGTCGTCTACAACCACTTTGGACCCAACTGCAGCCAACGCATGCCCAGGATACGACATGGGTATGCTCACGTGGCCAACAATCTGTACCAGGGATGGGGACAATACGCCATCGGAGGCAGCATGGAGCCCAGCCTCAAAAGCGAAGCCAACCTCTTCATAGCACCAACCTCAGGGAGTAAAGAGGTGACATGGAGAAAAGGCAGTGATGGAAATGGGGGTGCGTGGGAATTCCATTCGGTGAGGGACGTCTTTGAAAATGGAGCCTCTTTTACAGTAACAAAAGGTGGACGAGTGCCAAGGCCTAATTATAATGCTGAACAGAGTTTTAAAGTTGCAGATGCCAAATGCGTGAGGGCGTTGACTATGTCGTCGGGAGCATTGCGATGCACTAAAGATTCTTTGTGTTGA 1326 0.5038 MASPLHATLPTTTTTNYSILYNPFPSTPTTAISKHSLKLIHLTRTIEKYIGKSRMGSQDITAIILGVIIASILGTNLSEAKESKIHGLRMNEIDRCWRGNPEWRRHRTQLATCSVGYAGKMTNNIGNDLVHYKVTDPTDDPINPKPGTLRYGASMIQGKVWITFQRDMHIKLARPLLISSFTAIDARGVHVHIAHNACLMVYKASNVIIHGLRIHHCKPQGAGMVVGGEAKVISLSQVDGDAIRLVTASKVWIDHNTLYSCQDGLLDVTRGSTDVTVSNNWFREQNKVMLLGHDDGYLRDQNMKVTVVYNHFGPNCSQRMPRIRHGYAHVANNLYQGWGQYAIGGSMEPSLKSEANLFIAPTSGSKEVTWRKGSDGNGGAWEFHSVRDVFENGASFTVTKGGRVPRPNYNAEQSFKVADAKCVRALTMSSGALRCTKDSLC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1904 441 Gene3D - 90 434 IPR012334 -
Bisa01g1904 441 SUPERFAMILY Pectin lyase-like 112 428 IPR011050 -
Bisa01g1904 441 SMART amb_all 167 364 IPR002022 -
Bisa01g1904 441 PANTHER PECTATE LYASE 18-RELATED 87 438 IPR045032 GO:0030570
Bisa01g1904 441 Pfam Pectate lyase 196 358 IPR002022 -
Bisa01g1904 441 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Bisa01g1904 441 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Bisa01g1904 441 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Bisa01g1904 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Bisa01g1904 441 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Bisa01g1904 441 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Bisa01g1904 441 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1904 Bisa-ChrBisa01 33216451 33218462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1904 121 373 Polysaccharide Lyase AT5G09280 71.146 7.56e-140 400