Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1901 ATGCAAATTGGTAGAAAGGTGGATAAAAAGGAAGAGTCATTTGCTGATGGTGAAGAAAAAGAAGATGAGGAGGAAGAAGAAGATGAAGAAGGAAAGGGAGAAGGGGAATTCGAAGAGAGAAGGTTTTCGCCGGTCATCACCAATTTTAGGGGTTTGAAGAGCATTTACTCTTCCATTGTAATTCCTTACTTCCGCCTTCAATCAACCTTCTTTGAACCAAATCATTTAAAGAGGTTGGAAATGGCGAGTGGTTTTGGGGAATCAACGAGCACGTCTCCTCAGAACCCATCTTGCTCGGGGAATGGTTTTAATGATGCTGGAGATTTTGAATGCAACATCTGTTTCGATTTAGCCCAAGACCCCGTTATCACTCTGTGTGGTCATCTATTCTGTTGGCCATGCCTTTACCGTTGGCTTCATCATCACTCACATTCTCAAGAATGTCCGGTTTGTAAGGCTCTCATACAGGAGGAAAAATTGGTTCCCCTGTATGGCAGGGGCAAAACACAGGCGGATCCTAGAACAAAATCATACCCTGGAATGGAAATTCCCCACCGTCCTACAGGGCAGAGGCCTGAAACAGCCCCTCCACCAGAAGCCAATCCGTTCGGGAATTATGGGTTTGGATTGATGGGGGGATTCATACCCATGGCAACAGCAAGGTTTGGAAATTTCACCCTTGCTACAGCCTTTGGTGGTTTTATCCCATCGCTTCTTAACATTCAGTTCCATGGATTTCAAGATGCCACTGTTTATGGAACAACATCTGGTTATCCGTTTGGATTCAATACTTTTCATGGAGGGCACACACATGGTTTTCCCCAGGCAACTGGTCAAGGGCACCGGCATGAGGATAATGTTCTGAAGAATCTCCTTTTGTTGATTGGTGTACTTGTTCTGCTTGCTCTCATTTTTGGGTGCACCTTCCTACTTGTCTGCCCATGCGTATCTGAATTTTGCTCTCTTGTGTATGATTTAGCTGGTTATATTACTAATCTTGGTACAGATCAAGTATACTTAGCATATTCTGTTTGTATGAGGTTTGATGTCAGCAAATGGCAGTCTTCTAAAATCACGGCTTTATCTAATCACACAGTGAAATATTCTTCGGTGCATTCATTTCTGTTATCTTAG 1134 0.4339 MQIGRKVDKKEESFADGEEKEDEEEEEDEEGKGEGEFEERRFSPVITNFRGLKSIYSSIVIPYFRLQSTFFEPNHLKRLEMASGFGESTSTSPQNPSCSGNGFNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALIQEEKLVPLYGRGKTQADPRTKSYPGMEIPHRPTGQRPETAPPPEANPFGNYGFGLMGGFIPMATARFGNFTLATAFGGFIPSLLNIQFHGFQDATVYGTTSGYPFGFNTFHGGHTHGFPQATGQGHRHEDNVLKNLLLLIGVLVLLALIFGCTFLLVCPCVSEFCSLVYDLAGYITNLGTDQVYLAYSVCMRFDVSKWQSSKITALSNHTVKYSSVHSFLLS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1901 377 SUPERFAMILY RING/U-box 108 164 - -
Bisa01g1901 377 MobiDBLite consensus disorder prediction 17 33 - -
Bisa01g1901 377 ProSitePatterns Zinc finger RING-type signature. 126 135 IPR017907 -
Bisa01g1901 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 32 301 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bisa01g1901 377 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 95 165 - -
Bisa01g1901 377 Pfam Zinc finger, C3HC4 type (RING finger) 110 151 - -
Bisa01g1901 377 CDD RING-HC_AtRMA-like 109 153 - -
Bisa01g1901 377 ProSiteProfiles Zinc finger RING-type profile. 111 152 IPR001841 -
Bisa01g1901 377 SMART ring_2 111 151 IPR001841 -
Bisa01g1901 377 Coils Coil 7 27 - -
Bisa01g1901 377 MobiDBLite consensus disorder prediction 1 38 - -
Bisa01g1901 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 173 IPR013083 -
Bisa01g1901 377 MobiDBLite consensus disorder prediction 1 16 - -
Bisa01g1901 377 MobiDBLite consensus disorder prediction 169 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1901 Bisa-ChrBisa01 33151231 33154172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1901 104 305 C3H Transcription Factor Family AT2G23780 62.201 3.27e-89 266