Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1889 ATGATGATGAATCACCCTATTGAAACCCACATGCCCTTCTTCTCTCAGTCTCACCTATACCCTACTGCTACATACACTCAAATTATACCTCAACAAGGGGAGGGGAAGCGAAGACGACGTCGTAGGAAAAACAAGGGAGGAGATCAGAACGTGGGTGTGGGAGCGAAGAAGAGGAAGCTAAGTGAGGAGCAAGTGAGTCTTCTGGAGCTCAACTTTGGGAACGAACGTAAATTGGAGTCTGAGAGGAAGGACAGGCTGGCGTCGGAGCTGGGTCTGGACCCTCGCCAAGTGGCCGTGTGGTTTCAAAACCGAAGGGCTCGTTGGAAGAATCAGAAGCTGGATGAAGCCTACTCCGACCTCAAGAAACTTCACGAATCCACCATTCTCGAGAAATGCCGCCTTGAAACCCAGGTGTTAAAGCTAAAGGAGCAGCTTTCGGAAGCGGAGAAGGAGATCCAACGGCTGATAGAGCGCGGTGACAGAGTGTCAAATGACACAAATAGCCCCAATTCATCGCAGTCAATGGAAGCTGTTGACCCACCATTTCTTGGGGAGTTCGGAGTCGAAGGATACGATGATGATGTGCTCTTCTACACGACAGACCATTACATGAATGGCTTGGAATGGTTCAATTTGTTCGTGTGA 645 0.4961 MMMNHPIETHMPFFSQSHLYPTATYTQIIPQQGEGKRRRRRRKNKGGDQNVGVGAKKRKLSEEQVSLLELNFGNERKLESERKDRLASELGLDPRQVAVWFQNRRARWKNQKLDEAYSDLKKLHESTILEKCRLETQVLKLKEQLSEAEKEIQRLIERGDRVSNDTNSPNSSQSMEAVDPPFLGEFGVEGYDDDVLFYTTDHYMNGLEWFNLFV 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1889 214 ProSiteProfiles 'Homeobox' domain profile. 56 111 IPR001356 GO:0003677
Bisa01g1889 214 CDD homeodomain 56 112 IPR001356 GO:0003677
Bisa01g1889 214 Gene3D - 49 118 - -
Bisa01g1889 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 173 IPR045224 GO:0003700
Bisa01g1889 214 MobiDBLite consensus disorder prediction 30 56 - -
Bisa01g1889 214 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Bisa01g1889 214 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Bisa01g1889 214 SMART HOX_1 54 115 IPR001356 GO:0003677
Bisa01g1889 214 MobiDBLite consensus disorder prediction 158 178 - -
Bisa01g1889 214 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Bisa01g1889 214 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Bisa01g1889 214 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Bisa01g1889 214 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Bisa01g1889 214 Coils Coil 138 165 - -
Bisa01g1889 214 MobiDBLite consensus disorder prediction 162 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1889 Bisa-ChrBisa01 32917806 32919573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1889 3 214 Homeobox Transcription Factor Family AT4G36740 50.679 6.54e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Bisa01g1889 Homeodomain 2.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1643 11 37633036 37634666 Bisa01g1889 01 32917806 32919573 CCT
Bisa01g1889 01 32917806 32919573 Bisa01g1889 01 32917806 32919573 ECH