Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1884 ATGACAACTCGAATAGCGCCTGGTGTGGGAGCAAACTTGCTAGGTCAACACTCGGCAGAGAGGAATCAAGATGCTACGGCGTATGTCGGCAATCTCGACCCCCAGGTTACCGAGGAGTTATTATGGGAGCTATTTGTTCAGGCAGGTCCAGTTGTTAATGTCTATGTTCCAAAAGACAGGGTGACTAACCAGCATCAAGGTTATGGTTTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAGCTTTATGGAAAACCAATACGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTGGGAGCAAATCTTTTCATTGGAAACCTTGATCCCGATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTCATTGTTACAAATCCTAAGATCATGAGAGATCCTGAGACAGGAAACTCCCGTGGCTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCCGATTCAGCCATTGAGGCAATGAATGGGCAATATCTTTGCAATCGTCAAATTACTGTGTCTTATGCATATAAGAAAGACACCAAAGGGGAAAGGCATGGTACTCCAGCAGAGAGAGTTTTGGCTGCCAGCAATCCAAGTGCCCAGAAGAGCAGGCCTCACACTTTATTTGCCAGTGGGCCTCCTACACTTTCCAATGTTCCTCAGGCTAATGGTACCATTGCTGCTCCAGTGCCTCCTCGTCCCTTTGTTAATGGGGTTGCTCCACCTGCTGTTGCTGCCGTTCGTCCACAACCCCCTCAAGCTACACCTTTTCTACCTATGCCGGTTGCCGGGCAACAAGCATGGCATCAACAGCAGCCAGGTCAAACAATGCCACCACCTATGATGCCTCCACCTCCAGTCCAGCAATTCAGGCCACCTCACTCAAGTATGCCTCCTCCTCCGCCTCCACAATCGGTTCCAGCTCCCCCAAGGCCTCTTCCACCACCAACAGCAATGACAGGCCAACAACCTGTTTGGCGGCCACCACCACCCCCTCCACCTCAGCAACAGGGTGGACGGCCCCCTCCATTTCCTCATTCTTCCATGCTACCGCCGCCTCCACCTCCTTCGAGTTGA 1119 0.4951 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAQKSRPHTLFASGPPTLSNVPQANGTIAAPVPPRPFVNGVAPPAVAAVRPQPPQATPFLPMPVAGQQAWHQQQPGQTMPPPMMPPPPVQQFRPPHSSMPPPPPPQSVPAPPRPLPPPTAMTGQQPVWRPPPPPPPQQQGGRPPPFPHSSMLPPPPPPSS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1884 372 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 361 - -
Bisa01g1884 372 SMART rrm1_1 26 99 IPR000504 GO:0003723
Bisa01g1884 372 SMART rrm1_1 113 187 IPR000504 GO:0003723
Bisa01g1884 372 CDD RRM1_SF3B4 28 100 IPR034158 -
Bisa01g1884 372 CDD RRM2_SF3B4 111 193 IPR034159 -
Bisa01g1884 372 MobiDBLite consensus disorder prediction 208 238 - -
Bisa01g1884 372 MobiDBLite consensus disorder prediction 194 238 - -
Bisa01g1884 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Bisa01g1884 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Bisa01g1884 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Bisa01g1884 372 Gene3D - 16 106 IPR012677 -
Bisa01g1884 372 Gene3D - 107 204 IPR012677 -
Bisa01g1884 372 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Bisa01g1884 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Bisa01g1884 372 FunFam splicing factor 3B subunit 4 109 200 - -
Bisa01g1884 372 MobiDBLite consensus disorder prediction 290 372 - -
Bisa01g1884 372 MobiDBLite consensus disorder prediction 261 372 - -
Bisa01g1884 372 FunFam Splicing factor 3b subunit 4 16 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1884 Bisa-ChrBisa01 32770853 32775390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1884 18 195 Eukaryotic Initiation Factors Gene Family AT4G34110 28.962 3.50e-19 87.4