Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1857 ATGAAGAAGCCAATGATGCCAGGTTGCAGCAGCTACGAGGGGCACGTGATGGGAGCGTGTCCTTGCGGTATGTTTCACAGCCAAACCAATTCCTTCCCCATGATATACTCGGAGTCGGACCAAAATCCTTACGACTCGGTGGACGAATATTCCGACATGTATTCCTACACGCCCTCTTCGTCCTCCGTGGACTGCACGCTCTCCCTCGGAACCCCGTCCACGCGCTTAACAGAGGACGAAGAGAAGCGCAGTAACCGCCACGAGCGTCGCTGGAACATATTCCAGTCCAAACAATCCCACAGTAACAGGTCCACCCGACCCTCCAATTCTTCCTCCTCCACCAATGACCCCTTACTCGCCCGTCGTTGTGCCAACTGCGACACTACTTCCACACCCCTCTGGCGTAACGGCCCTAGAGGCCCTAAGTCGCTATGCAATGCGTGTGGGATCAGATACAAGAAGGAAGAGAGGAGAGCCAGTGCGGCGGCGGCGGCAGCCACAGCTTCGGCGTCGGGCGGCGTTGGGGAGTGGACGGCAATGTACAGCCACCACAACGGTTACTGGATTCAGAACAGTAAAACTGAAATGCCTTTTTGGACTGCATCATCGAATCTAACAGTCCAATGGAGCAAGCGTCGCATCGGCTGGGAGAAGTGA 657 0.5571 MKKPMMPGCSSYEGHVMGACPCGMFHSQTNSFPMIYSESDQNPYDSVDEYSDMYSYTPSSSSVDCTLSLGTPSTRLTEDEEKRSNRHERRWNIFQSKQSHSNRSTRPSNSSSSTNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAAAATASASGGVGEWTAMYSHHNGYWIQNSKTEMPFWTASSNLTVQWSKRRIGWEK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1857 218 PANTHER GATA TRANSCRIPTION FACTOR 18 15 195 IPR044272 GO:0003700|GO:0009908
Bisa01g1857 218 Gene3D - 119 171 IPR013088 GO:0006355|GO:0008270
Bisa01g1857 218 Pfam GATA zinc finger 123 157 IPR000679 GO:0006355|GO:0043565
Bisa01g1857 218 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 120 158 - -
Bisa01g1857 218 CDD ZnF_GATA 122 154 IPR000679 GO:0006355|GO:0043565
Bisa01g1857 218 ProSitePatterns GATA-type zinc finger domain. 123 148 IPR000679 GO:0006355|GO:0043565
Bisa01g1857 218 MobiDBLite consensus disorder prediction 75 94 - -
Bisa01g1857 218 SMART GATA_3 117 173 IPR000679 GO:0006355|GO:0043565
Bisa01g1857 218 MobiDBLite consensus disorder prediction 67 117 - -
Bisa01g1857 218 ProSiteProfiles GATA-type zinc finger domain profile. 117 153 IPR000679 GO:0006355|GO:0043565
Bisa01g1857 218 MobiDBLite consensus disorder prediction 95 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1857 Bisa-ChrBisa01 32328072 32330271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1857 22 187 C2C2-Gata Transcription Factor Family AT3G50870 42.995 5.04e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa01g1857 GATA 5.7e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1683 11 38127378 38128540 Bisa01g1857 01 32328072 32330271 CCT
Bisa01g1857 01 32328072 32330271 Bisa01g1857 01 32328072 32330271 ECH