Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1849 ATGGTTAACGGCAATAACGTGAACTTTTACTTTGTGTTGAAAGGAAGATTGATATGTTATGCAAATATGTCACTGAAAAGCATGGTTTGCCAACTCAAGATGAGCAACAAATCGAAGCGAGTTGCAGAAGCTAAGCAATGGCATGGTCAAAAAACAAAGTCACATATTGCTCCTGAAGTCCCTCTACCTCCCTCTGATCTTAATGAACAAGGGCAGTGGGCTAATTTACCTCCGGAACTGCTTTTGGACATTATCGGGAGGGTGGAAGAGAGTGAGACATCTTGGCCTGAATGGGTTGGCATTGTTTATTGTGCTTCAGTATGTAAATCATGGAGAGCCGTTACAAAGGAGGTCGTCAGAACTCCCGAGCAATGTGGGAGGCTCACATTTCCTATCTCAGTGAAGCAGCCTGGTCCTCGCAATTCTCCATTACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACTTATTTTTTGTACTTTGCAGCGATTCCGTTGGAGAACGAGAATCCCAAGATGCTATTAGCTGCCAAAAAGATAAGAAGAGCAACAGGCACGGAAATTATTATATCTTTGGCTGCAAATGATTTTTCTCAGGCCAGCAACACATATCTCGGTAAATTGAGGTCTAATTTTTTGGGAACCAAGTTCACTGTATATGACAACCAACCTCCACAGAAAGCTAGCGTTCAACCTAATAATCATTCTAGTAGAAAATTCCACTGTATGCAAGTGTCCCCCAAAGTTCCAGCATGTAACTACAATGTTGCCACTATTAACTATGAACGCAATGTTCTCCGCACAAGAGGTCCAAGAAGAATGCACTGCATTTTGAACTCCATACCTATCTCAGCTATCCAGGAAGGAGGCACCGCCCCAACCCCGACAACTTTTCTGCAATATTCTTCCTCACAGGCGCCAAAAGGAAAAGATACAATTATAGATTCAAACACTGCAAATCTCCAAGATCCACCAGCTCTGAGCCAGGGCTCAGTTGAGCCTCTTGTTCTTAAAAACAAGGCTCCCAGATGGCATGGACAGCTGCGGTGCTGGTGCCTGAACTTTAGGGGCCGTGTTACAGTGGCTTCTGTTAAGAACTTCCTGCTTGCGGCTGTTGTTGATCCATCTCATAATGTTTCTGCTGCAGAACAAGAAAAGGTCATCTTGCAGTTTGGAAAAATTGGAAAAGACATTTTTTCCATGGACTACCGTTATCCTCTCTCTGCTTTTCAAGCCTTTGCCATATGCCTGAGCAGCTTTGATACTAAACCAGCCTGTGAATGA 1284 0.4361 MVNGNNVNFYFVLKGRLICYANMSLKSMVCQLKMSNKSKRVAEAKQWHGQKTKSHIAPEVPLPPSDLNEQGQWANLPPELLLDIIGRVEESETSWPEWVGIVYCASVCKSWRAVTKEVVRTPEQCGRLTFPISVKQPGPRNSPLQCFIRRNRETSTYFLYFAAIPLENENPKMLLAAKKIRRATGTEIIISLAANDFSQASNTYLGKLRSNFLGTKFTVYDNQPPQKASVQPNNHSSRKFHCMQVSPKVPACNYNVATINYERNVLRTRGPRRMHCILNSIPISAIQEGGTAPTPTTFLQYSSSQAPKGKDTIIDSNTANLQDPPALSQGSVEPLVLKNKAPRWHGQLRCWCLNFRGRVTVASVKNFLLAAVVDPSHNVSAAEQEKVILQFGKIGKDIFSMDYRYPLSAFQAFAICLSSFDTKPACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1849 427 Gene3D - 67 120 - -
Bisa01g1849 427 PANTHER TUBBY-RELATED 41 425 - -
Bisa01g1849 427 Pfam F-box domain 73 120 IPR001810 GO:0005515
Bisa01g1849 427 Pfam Tub family 134 422 IPR000007 -
Bisa01g1849 427 Gene3D Tubby Protein; Chain A 131 427 IPR025659 -
Bisa01g1849 427 SUPERFAMILY Tubby C-terminal domain-like 122 427 IPR025659 -
Bisa01g1849 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Bisa01g1849 427 SUPERFAMILY F-box domain 69 117 IPR036047 GO:0005515
Bisa01g1849 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Bisa01g1849 427 PRINTS Tubby superfamily signature 337 354 IPR000007 -
Bisa01g1849 427 PRINTS Tubby superfamily signature 253 280 IPR000007 -
Bisa01g1849 427 PRINTS Tubby superfamily signature 188 204 IPR000007 -
Bisa01g1849 427 PRINTS Tubby superfamily signature 204 228 IPR000007 -
Bisa01g1849 427 PRINTS Tubby superfamily signature 355 371 IPR000007 -
Bisa01g1849 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1849 Bisa-ChrBisa01 32172126 32174373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1849 23 427 TUB Transcription Factor Family AT2G18280 58.495 1.40e-166 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bisa01g1849 Tub 8e-101 CL0395