Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1803 ATGGTTAAGTCATCGTCTTGCTGTGAGAAGTTGGGGTTGAAGAAAGGGCCCTGGACTCCTGAGGAAGACCACAAGCTCGTCTCTTACATTCAACACAATGGCCATGGAAGCTGGCATGCCTTGCCTTCCAAAGCCGGGCTTCGGAGATGTGGGAAGAGTTGCAGACTGAGGTGGGCCAATTACCTAAGACCTGATATAAAACGAGGGAAGTTCAGCTTGCAGGAAGAGCAAACAGTGATTCAACTTCATGCTCTTCTTGGAAACAGATGGTCAGCCATAGCAGCTCGCTTACCAAAAAGAACAGACAACGAGATCAAGAACTATTGGAACACCCACCTCAAGAAAAGGCTCACCAATTTGGGCATTGACCCCACCACCCACAAGCCCAAAAACGACACCGTCAACAGCAACTCAAAGGACGCAGCCAACCTCAGCCACATGGCCCAGTGGGAAAGCGCTCGGCTCGAAGCCGAAGCCAGACTGGTCAAAGAAGCCAAGCTGCAGGTCCAGAACCAGCACGGCTCCTCCTCCAACGAGCCCCAACGAACTCGGCTCATGCTCAGTAAAATCCCACCTCGCCCATCCATACCACCATGCCTCGAAGTCCTCAAGGCATGGCAAAACTTATGGTCGTCCTCCTCCACGTCAAACTCAACACCACCACCCCCCACAACTAAACATCACGCCGATATGCATTTGCATAGCATGTCCGCCATGATGCTCGCCATCGACGACCTCGAGTCACCGGTTTCGACGTTGAACTTCCCGGACACCACTGTCCTCTCTGACTCAAACACTGCCTTACTTCCACCTGACGGGGGAGTCGTCAAAGAAGCTAGTCAACACATCAAGCCGTGGGAGGTTTTAACACAGTGTGAAAAGGGAGTAATGGGAGACGACGACATTATGCTGGCGGTGGAAGCATTCAGATCAGCAGGGTGTGATGAGATCGAGAAATGTACTAATTATGTCGTGGAAGGTCTCCAAAATGAAGATGTTCATGTCTCTGAACCCAATGAGAATTACTCAGGAGTCCTCGATGAAAGCACCGACTTTGAGGAGAAGCATTATTGGAATAATTTGCTGGATTTGGTCGATGATTTGTCCTTACCTGGTTAG 1119 0.5058 MVKSSSCCEKLGLKKGPWTPEEDHKLVSYIQHNGHGSWHALPSKAGLRRCGKSCRLRWANYLRPDIKRGKFSLQEEQTVIQLHALLGNRWSAIAARLPKRTDNEIKNYWNTHLKKRLTNLGIDPTTHKPKNDTVNSNSKDAANLSHMAQWESARLEAEARLVKEAKLQVQNQHGSSSNEPQRTRLMLSKIPPRPSIPPCLEVLKAWQNLWSSSSTSNSTPPPPTTKHHADMHLHSMSAMMLAIDDLESPVSTLNFPDTTVLSDSNTALLPPDGGVVKEASQHIKPWEVLTQCEKGVMGDDDIMLAVEAFRSAGCDEIEKCTNYVVEGLQNEDVHVSEPNENYSGVLDESTDFEEKHYWNNLLDLVDDLSLPG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1803 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Bisa01g1803 372 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Bisa01g1803 372 Gene3D - 70 117 - -
Bisa01g1803 372 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Bisa01g1803 372 FunFam MYB transcription factor 70 117 - -
Bisa01g1803 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bisa01g1803 372 FunFam Transcription factor RAX3 8 68 - -
Bisa01g1803 372 SMART sant 14 64 IPR001005 -
Bisa01g1803 372 SMART sant 67 115 IPR001005 -
Bisa01g1803 372 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Bisa01g1803 372 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Bisa01g1803 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 211 - -
Bisa01g1803 372 CDD SANT 70 113 IPR001005 -
Bisa01g1803 372 Gene3D - 14 67 - -
Bisa01g1803 372 CDD SANT 17 62 IPR001005 -
Bisa01g1803 372 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1803 Bisa-ChrBisa01 31342715 31345169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1803 5 181 MYB Transcription Factor Family AT5G15310 74.586 1.64e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa01g1803 Myb_DNA-binding 1e-13 CL0123