Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1787 ATGGGCACTGTCAAGATTTCACGAAGATACTATCTTTTCGTCTCCGGTGAGAAGAAAAATGCATACAGCCAGAGTTCTTATGCATTAAAGAAAGGCGTTGTTGTGGTTATAATTTACAGGATGGGCAGAGTGAAGCTAAAAATAAAAAGGCTCGAGAACACTAATGGCCGTCAGGCAACATATGCTAAAAGGAGGAACGGAATTATGAAAAAGGCTTCGGAGTTATCTATACTGTGCGATATAGATATTATACTTCTCATGTTCTCACCAAATGGGAAGCCAGCATTATGCAGAGGGAGACGCAGTAACATAGAGGAGATTATTACAAAGTTTGCTCAATTAACTCCACAGGAAAGGGCAAAAAGGAAGTTGGAGAATCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGACCATGATGTAAATATACAAGAATTTCTGGGTACAAGCCATTGGACTGAGCCTGATAAAATCAACAGTGTGGAACAATTGGGAGAGATGGAAAATTCTCTCAGGGATTCAATTAACCAAATTCGGTTGCATAAGAGAAAAGAAGAAAGGATATTCAAGGAAAAACCTGGTAGTAATATTGAGGCATCTGTAAGAAAAAGATTCAAAGAGATGCATATTCCCTTCAGAATGGGCGCTGAGCAACATCTCCAGCCTCTATCATGGATTGCCAACAATGACAGCCAACATATGGTGTTACCAGACGACTCAAACTTGCTTCTCCCCAAAGATGTAGAGTGCTCTGCAAGCTCCTCTTTCGGGAATTATGCTAGTTGTCTTGGCTTGAGTACAAAAACAGATCTTCCTAACTCTGGGCAAGAAAACGGTGTCCTCAGTGACTTGACAAGTACTGCTTCTCTAAGACTACAATTAGGCGGGCAGTTTCCGTACCTGCCATACAATTTCAATCTACTGAATGACATGAAGTTACAGCCAGGTGCAGAGATATACCCAGATGAAAACCCGATAGATTTTCACCCTAATAAAAGCTTTGAAGCCCCCAGACCTGCTTGTCAAACTAACCACCTTGGTTGGGCTTCCACATCAGGGCCTTGTGCTGTTACTACCATGTTTGATGACAATTTGTATGCCCAGCCAAGTTTCCCTCAAGCAAACTATGGCTTCACATAG 1140 0.414 MGTVKISRRYYLFVSGEKKNAYSQSSYALKKGVVVVIIYRMGRVKLKIKRLENTNGRQATYAKRRNGIMKKASELSILCDIDIILLMFSPNGKPALCRGRRSNIEEIITKFAQLTPQERAKRKLENLEALKKTFKKLDHDVNIQEFLGTSHWTEPDKINSVEQLGEMENSLRDSINQIRLHKRKEERIFKEKPGSNIEASVRKRFKEMHIPFRMGAEQHLQPLSWIANNDSQHMVLPDDSNLLLPKDVECSASSSFGNYASCLGLSTKTDLPNSGQENGVLSDLTSTASLRLQLGGQFPYLPYNFNLLNDMKLQPGAEIYPDENPIDFHPNKSFEAPRPACQTNHLGWASTSGPCAVTTMFDDNLYAQPSFPQANYGFT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1787 379 ProSiteProfiles MADS-box domain profile. 41 93 IPR002100 GO:0003677|GO:0046983
Bisa01g1787 379 CDD MADS 42 94 - -
Bisa01g1787 379 SMART madsneu2 41 100 IPR002100 GO:0003677|GO:0046983
Bisa01g1787 379 Gene3D - 54 136 IPR036879 GO:0003677|GO:0046983
Bisa01g1787 379 PRINTS MADS domain signature 43 63 IPR002100 GO:0003677|GO:0046983
Bisa01g1787 379 PRINTS MADS domain signature 63 78 IPR002100 GO:0003677|GO:0046983
Bisa01g1787 379 PRINTS MADS domain signature 78 99 IPR002100 GO:0003677|GO:0046983
Bisa01g1787 379 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 94 IPR002100 GO:0003677|GO:0046983
Bisa01g1787 379 Coils Coil 117 140 - -
Bisa01g1787 379 PANTHER SERUM RESPONSE FACTOR HOMOLOG 43 218 - -
Bisa01g1787 379 FunFam Agamous-like MADS-box protein AGL30 54 136 - -
Bisa01g1787 379 SUPERFAMILY SRF-like 42 135 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1787 Bisa-ChrBisa01 30694458 30699646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g1787 41 372 Type I MADS-box Gene Family AT2G03060 43.117 8.06e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa01g1787 SRF-TF 4.1e-19 No_clan