Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa01g1743 | ATGGATTTGTGGTGCTTCAATGGACTTTATACTGAAAACTATGACCAGAATGGTATTAGACAGCAAAAGACCGTGCAACATGCACCTTTCATTAAATCTCTCTGGAACGAGGAACCCAGCAATGTTTCAAATCCCAAAGTTGGACTTATTTGTCCCCCAAAGTTAAGGAAAAGGACAAAGGGAGCCATCCCCATCTCAGAGATTTCAGTTGCTGACGTGGCATTTACCGGCAGAAAACGAAATGAGGGAGCCAGGAACAAACAGTTAAGCTTCTCAGAGAGAGAGAGAAAGAGAGAAAGAGAAGAGCGAAAACCTCACATAAGGCCAGGGATTCAGACGCGTACGTTAGGGCGCACGTTAACAATCTGTGAAGTTCGGCAAATTACTCAAGTTGTGAAATCGCCGGCATTGTCTCTGACAGTCTTTCCGAATCGAAACCCGAAGCTCTGCTATTTTTTGGGGAGGTTCAAGGAGCTCGGATTCGTTGAAATTGGCTCCGCATTGCAGAGACCTGAGAATTTCTTACAACTATGGTTTGAAGACATTCTTAGGGTTTCTCTGAGACCGGGTTTTGGCGATAGGAATATCGAGCAGGCAATTACATCTCTTAAGAAAGGTGCATATCTGCTAAAGTACGGGCGCAGAGGGAAGCCAAAGTTCTGCCCATTTAGGCTTTCCAATGATGAATCTCTACTCATATGGTACTGTGACAAGGATGAGAAACAACTAGATCTCAGTACTGTTTCAAAAATAATTCCTGGGCAGCGAACTGCCATATTTCAGCGGTATCCTCGGCCTGAAAAGGAATATCAATCATTTTCTCTTATATATGGAGATAGGTCCTTGGACTTGATTTGTAAGGACAAGGACGAAGCTGAGATCTGGTTTGTTGGTCTTAAGGCATTAGTTACTCGGGGTACTGATCACAAGTGGAGATACGAATCAAGATGTGAAAGTGTTTGTTCTAATAGTCCACAATGTCGTACACGAAGAAATTCTCCATCAGTTACACCATTTGACCCTGTGGATGCTACAGAATTTTCTTTAGACAATGCTTCACAAAATAGATTTGGAAGGGCTTTCTCTGAAATTATCTCGTATACCTCAGCTGGCAAGAGTACCTTTCAAGATGAACTAAATGCAAATTCCTCATTTTCCTCTGGGTCTGTGGATAACTCAAACAATCGAAATTCTACAGCTGAGCCAGTTCGAGTTAGTGTATCCAGTGCTGTAAGTTCATCCAGCCTTAGTTCTTATCAAGAAGATTTTGATGCTATAGGTGATGTTTTTATTTGCGGAGAAGGTATTGGTGATGGAATCCTTGGTGGTGGGTTACATAGATTTGGAACCTTATCTAGTTCAGAGATGGATGCATTTCTCCCCAAGGCATTGGAATCAAAAGTTGTTCTGGATGTTCAAAGTATTGCTTGTGGTTACAAACATGCTGCTGTAATTACCAAGCAAGGACAGATATATAGTTGGGGGGAGGAGTCAGGAGGTAGGCTTGGGCATGGTGTAGAAGTGGATGTTTCCCACCCTAAGCTCATTGACACTCTTAGTGGCATGAATTTTGAATTAGTAGCATGTGGGGAATATCATACTTGTGCTGTTACATCTTCTGGAGATCTTTATACTTGGGGTGATGGTACTCATAATTCTGGTTTGCTTGGGCATGGAAATGAAGTCAGTCATTGGATTCCTAAGAGAGTAAGTGGTAACATGGAGGGTGTACATGTATCCTATGTGGCTTGTGGACCTTGGCACACGGCTATTGTGACATCTTTTGGCCAGTTGTTCACATTTGGGGATGGATCTTTTGGTGCCTTAGGTCAAGGAGATTATAGTAGCACAAATGTTCCTCGGGAAGTAGAAACTCTGAAAGGGTTGAGAACAACCAGGGTTTCATGTGGTGTTTGGCACACTGCTGCTGTTGTTGAGGAGGCAACTGAATCTGTGGAATATTCTGAGAACTCTCCCTTTGGAAGACTGTTCACCTGGGGTGACGGAGATAAAGGCCAACTTGGACATGGTGATAATGAACCTAGACTTTTTCCTGAGTGTGTTATTGCATTGGATAATGAAAATATATGTCAAGTGGCTTGTGGTGACTATCTAACTATTGCTTTGACAACCTCAGGACATGTATATACAATGGGCAGTACTGCTTATGGACAACTTGGCAGTCCTGCAGCTGATGGAAAAATCCCTACACGGGTTGAAGGTAAAATTTCTGGCAGATTTATAGAAAATATTGCCTGCGGTTCGTACCATGTCGCAGTCCTGTCTTCTAAGGCCGAGGTTTACACCTGGGGAAAGGGTTTGAATGGGCAGCTAGGTCATGGAGACAATGATCACCGAAATACACCCACACTTGTTAAGTTTTTTGAAAATAAGCAAGCAAGGAGTGTTGTTTGTGGTTCAAACTTCACCGCTGTTGTATGTCCTCATAAATGGGTATCAATTGCTGACTATTCTGTCTGTTCTGGTTGTCACAATCCTTTTGGATTCATAAGAAAACGTCATAACTGTTACAACTGTGGACTTGTTTTTTGCAAAACATGCAGCAGTAGAAAATCTACCAAAGCTTCCCTTGCTCCAAATTCCAACAAGCCATTTCGTGTTTGTGATGATTGTTATTCTAAACTTAAGAAAGTCACAGAATCTGTTTCCTTCGTGAAAAATAATACATTGAAAAGTCCACCTGACACTTGGGCTGGTAAATTACAGGGAACACTATTAAAGCTTTCATCTTTTGGTTCCCCTGTTCAAGCAGAAAGCAGGCACTCTAAGCTTCCAGAATCACATCATAGCCATGTCTTTCCAGCTTTGAATGGAAAACCACAGTCAGGCATGACTCCAAACGCATCAATTTTTCTTCCTGGAGCATTAAAGAAGACCCTTTCTGTGCCTGTTAGTAGTATGAACTCAGAAGCGTCATCTGCAGCTTCAGAAAAGTCAAGCCCACGACACTCTACTGAAGATGTTTATGATGATTCAAAGCACAGAAATGACATTTCAAGTCAAGAAGTTATCAGTTTAAGGGCACAGGTTGAAGATCTTACCCGTAAATCGAAGCATTTTGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACCGCAGTAGCTGCAGAAGAAGCTCAGAAGTGTAAATCTGCCAAAGAGGTTATAAAGTCATTGACATCTCAGTTGAAGGAAATGGTGCAAAGGATGCCAGAAGGAGATAATGACAACTTCAGTGCAGACTTCTCTGCCGAAATTATTACTAATATTCTAAATCAGTCCTTAGATGAGAGCCATAAAACAAATTGTGACACTCCTGAAATTGAGTCAAATAGCAATGCAGCAAATCGGATATTGCCTAACGTTTCCAAAGCACCAAGTGGAAAGTCAGAGTGGGTGGTGCAAGATGAACCGGGTGTATACATAAGTTTGTCCTCCTTGCCAAATGGTGGTAATGAACTTCAACGTGTGCGCTTCAGTCGGAGACATTTCACTCCACAAGAAGCTGAAAAGTGGTGGGCTGAAAATGGAACCAAAGTATTGGAGCGGCACCATGTAGTTGCTTCGTCTGCTATGGCCATTCCTCGTCAATTTTGTCATGGCCTCAGAAAAATGGAGGTTAAGCAATTCCTTGTTGCGGGATAG | 3654 | 0.4231 | MDLWCFNGLYTENYDQNGIRQQKTVQHAPFIKSLWNEEPSNVSNPKVGLICPPKLRKRTKGAIPISEISVADVAFTGRKRNEGARNKQLSFSERERKREREERKPHIRPGIQTRTLGRTLTICEVRQITQVVKSPALSLTVFPNRNPKLCYFLGRFKELGFVEIGSALQRPENFLQLWFEDILRVSLRPGFGDRNIEQAITSLKKGAYLLKYGRRGKPKFCPFRLSNDESLLIWYCDKDEKQLDLSTVSKIIPGQRTAIFQRYPRPEKEYQSFSLIYGDRSLDLICKDKDEAEIWFVGLKALVTRGTDHKWRYESRCESVCSNSPQCRTRRNSPSVTPFDPVDATEFSLDNASQNRFGRAFSEIISYTSAGKSTFQDELNANSSFSSGSVDNSNNRNSTAEPVRVSVSSAVSSSSLSSYQEDFDAIGDVFICGEGIGDGILGGGLHRFGTLSSSEMDAFLPKALESKVVLDVQSIACGYKHAAVITKQGQIYSWGEESGGRLGHGVEVDVSHPKLIDTLSGMNFELVACGEYHTCAVTSSGDLYTWGDGTHNSGLLGHGNEVSHWIPKRVSGNMEGVHVSYVACGPWHTAIVTSFGQLFTFGDGSFGALGQGDYSSTNVPREVETLKGLRTTRVSCGVWHTAAVVEEATESVEYSENSPFGRLFTWGDGDKGQLGHGDNEPRLFPECVIALDNENICQVACGDYLTIALTTSGHVYTMGSTAYGQLGSPAADGKIPTRVEGKISGRFIENIACGSYHVAVLSSKAEVYTWGKGLNGQLGHGDNDHRNTPTLVKFFENKQARSVVCGSNFTAVVCPHKWVSIADYSVCSGCHNPFGFIRKRHNCYNCGLVFCKTCSSRKSTKASLAPNSNKPFRVCDDCYSKLKKVTESVSFVKNNTLKSPPDTWAGKLQGTLLKLSSFGSPVQAESRHSKLPESHHSHVFPALNGKPQSGMTPNASIFLPGALKKTLSVPVSSMNSEASSAASEKSSPRHSTEDVYDDSKHRNDISSQEVISLRAQVEDLTRKSKHFEAELERTSKQLKEVTAVAAEEAQKCKSAKEVIKSLTSQLKEMVQRMPEGDNDNFSADFSAEIITNILNQSLDESHKTNCDTPEIESNSNAANRILPNVSKAPSGKSEWVVQDEPGVYISLSSLPNGGNELQRVRFSRRHFTPQEAEKWWAENGTKVLERHHVVASSAMAIPRQFCHGLRKMEVKQFLVAG | 1217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa01g1743 | 1217 | Gene3D | - | 552 | 655 | IPR009091 | - | |
| Bisa01g1743 | 1217 | Gene3D | - | 359 | 551 | IPR009091 | - | |
| Bisa01g1743 | 1217 | CDD | FYVE_like_SF | 827 | 879 | - | - | |
| Bisa01g1743 | 1217 | MobiDBLite | consensus disorder prediction | 924 | 954 | - | - | |
| Bisa01g1743 | 1217 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 489 | 540 | IPR000408 | - | |
| Bisa01g1743 | 1217 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 821 | 883 | IPR017455 | - | |
| Bisa01g1743 | 1217 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 765 | 816 | IPR000408 | - | |
| Bisa01g1743 | 1217 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1132 | 1187 | IPR013591 | - | |
| Bisa01g1743 | 1217 | SUPERFAMILY | PH domain-like | 196 | 303 | - | - | |
| Bisa01g1743 | 1217 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 596 | 644 | IPR000408 | - | |
| Bisa01g1743 | 1217 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 661 | 709 | IPR000408 | - | |
| Bisa01g1743 | 1217 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 489 | 537 | IPR000408 | - | |
| Bisa01g1743 | 1217 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 712 | 761 | IPR000408 | - | |
| Bisa01g1743 | 1217 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 540 | 591 | IPR000408 | - | |
| Bisa01g1743 | 1217 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 766 | 813 | IPR000408 | - | |
| Bisa01g1743 | 1217 | Coils | Coil | 1010 | 1037 | - | - | |
| Bisa01g1743 | 1217 | Coils | Coil | 1052 | 1072 | - | - | |
| Bisa01g1743 | 1217 | SUPERFAMILY | RCC1/BLIP-II | 427 | 818 | IPR009091 | - | |
| Bisa01g1743 | 1217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 824 | 892 | IPR013083 | - | |
| Bisa01g1743 | 1217 | Gene3D | - | 195 | 310 | IPR011993 | - | |
| Bisa01g1743 | 1217 | ProSiteProfiles | BRX domain profile. | 1133 | 1188 | IPR013591 | - | |
| Bisa01g1743 | 1217 | PRINTS | Chromosome condensation regulator RCC1 signature | 702 | 720 | IPR000408 | - | |
| Bisa01g1743 | 1217 | PRINTS | Chromosome condensation regulator RCC1 signature | 598 | 612 | IPR000408 | - | |
| Bisa01g1743 | 1217 | PRINTS | Chromosome condensation regulator RCC1 signature | 541 | 557 | IPR000408 | - | |
| Bisa01g1743 | 1217 | PRINTS | Chromosome condensation regulator RCC1 signature | 582 | 598 | IPR000408 | - | |
| Bisa01g1743 | 1217 | PRINTS | Chromosome condensation regulator RCC1 signature | 760 | 781 | IPR000408 | - | |
| Bisa01g1743 | 1217 | PRINTS | Chromosome condensation regulator RCC1 signature | 491 | 507 | IPR000408 | - | |
| Bisa01g1743 | 1217 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 239 | 1068 | - | - | |
| Bisa01g1743 | 1217 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 475 | 485 | IPR000408 | - | |
| Bisa01g1743 | 1217 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 398 | 649 | - | - | |
| Bisa01g1743 | 1217 | SUPERFAMILY | FYVE/PHD zinc finger | 817 | 894 | IPR011011 | - | |
| Bisa01g1743 | 1217 | Gene3D | - | 657 | 823 | IPR009091 | - | |
| Bisa01g1743 | 1217 | MobiDBLite | consensus disorder prediction | 84 | 109 | - | - | |
| Bisa01g1743 | 1217 | Pfam | Transcription factor BRX N-terminal domain | 1047 | 1074 | IPR027988 | - | |
| Bisa01g1743 | 1217 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 427 | 488 | IPR000408 | - | |
| Bisa01g1743 | 1217 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 634 | 644 | IPR000408 | - | |
| Bisa01g1743 | 1217 | MobiDBLite | consensus disorder prediction | 974 | 1006 | - | - | |
| Bisa01g1743 | 1217 | SMART | fyve_4 | 815 | 884 | IPR000306 | GO:0046872 | |
| Bisa01g1743 | 1217 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 713 | 764 | IPR000408 | - | |
| Bisa01g1743 | 1217 | CDD | PH_PLC_plant-like | 194 | 304 | - | - | |
| Bisa01g1743 | 1217 | Pfam | FYVE zinc finger | 817 | 883 | IPR000306 | GO:0046872 | |
| Bisa01g1743 | 1217 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 541 | 595 | IPR000408 | - | |
| Bisa01g1743 | 1217 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 596 | 647 | IPR000408 | - | |
| Bisa01g1743 | 1217 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 661 | 712 | IPR000408 | - | |
| Bisa01g1743 | 1217 | MobiDBLite | consensus disorder prediction | 987 | 1006 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa01g1743 | Bisa-ChrBisa01 | 30065544 | 30076492 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa01g1743 | 1131 | 1189 | Major Intrinsic Protein MIP | AT1G31880 | 50.847 | 2.15e-14 | 74.3 |