LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g1734	ATGGGTAACTGCCTAGATTCTTCTGCTAAAGTAGACACAGCTCAGAGTTCCCGAGCCACTTCTGCATCTGGAATTTCAAAAGCATCTGCTCCTTCCAGCTTATCTATTCCATCATACAGTGAAAAAAGCAATGCCTCAAGTCTTCCTACACCAAGGTCTGAGGGTGAAATCTTGTCTTCTCCAAATCTAAAGCCCTTCACGTTCAATGAGCTAAAGAATGCCACGAGAAATTTTCGTCCGGACAGTCTTCTTGGTGAAGGGGGATTTGGCTATGTTTATAAGGGATGGATTGATGAGCACACATTTCAAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTGAAAAGGCTAAAACCTGAAGGCTTTCAAGGTCATAAGGAGTGGTTGACTGAAGTTAACTACCTTGGGCAACTCCACCATCCCAATTTGGTTAAATTAATTGGATACTGCTTGGAGGGTGAGAACCGACTATTGGTATATGAGTTCATGCCCAAAGGGAGCTTAGAGAACCATCTGTTTAGAAGAGGGCCTCAGCCACTCTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGGGCTGCCAGAGGGCTCTCTTTTCTCCATAATGCCAAGTCGCAAGTCATATACCGTGATTTTAAAGCTTCTAATATTCTACTAGATGCTGAGTTCAATGCTAAACTCTCTGATTTTGGCTTAGCTAAAGCGGGTCCTACTGGTGATAGAACTCATGTGTCCACTCAAGTTATGGGTACTCATGGATATGCAGCACCTGAATATGTTGCTACAGGTCGGTTGACAGTCAAAAGTGATGTATATAGCTTTGGGGTTGTGTTGGTTGAACTTCTGTCTGGAAGACGTGCTGTTGATAAAACAAAAGCTGGTGTGGAGCAGAATCTGGTAGACTGGGCAAAACCATATTTGGGTGACAAACGAAGACTATTTCGGATTATGGACACCAAGTTGGAGGGCCAATACCCACAGAAAGGAGCCTACACGGCAGCAACTCTTGCTCTACAATGCCTGAATAGTGAAGCCAAGGCAAGGCCTCTAATGACAGAGGTTCTGGCAACTCTTGAACAGATCGAAGCCCCCAAGAATGCAGGCCGACTCTCCCACTCAGAGCAACGCAGAGATGCCGTTCCTGTGAGAAACTCTCCTGCACGAAACAGGTCCCCTCTACATCTCACTCCAACTGCATCTCCATTGCCATCTCACCGGCAAACTGCCCGTGTACACTAA	1239	0.4592	MGNCLDSSAKVDTAQSSRATSASGISKASAPSSLSIPSYSEKSNASSLPTPRSEGEILSSPNLKPFTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFQASKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTHGYAAPEYVATGRLTVKSDVYSFGVVLVELLSGRRAVDKTKAGVEQNLVDWAKPYLGDKRRLFRIMDTKLEGQYPQKGAYTAATLALQCLNSEAKARPLMTEVLATLEQIEAPKNAGRLSHSEQRRDAVPVRNSPARNRSPLHLTPTASPLPSHRQTARVH	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g1734	412	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	207	219	IPR008271	GO:0004672\|GO:0006468
	Bisa01g1734	412	SUPERFAMILY	Protein kinase-like (PK-like)	49	358	IPR011009	-
	Bisa01g1734	412	CDD	STKc_IRAK	84	361	-	-
	Bisa01g1734	412	MobiDBLite	consensus disorder prediction	369	383	-	-
	Bisa01g1734	412	MobiDBLite	consensus disorder prediction	389	405	-	-
	Bisa01g1734	412	MobiDBLite	consensus disorder prediction	1	61	-	-
	Bisa01g1734	412	Gene3D	Transferase(Phosphotransferase) domain 1	164	383	-	-
	Bisa01g1734	412	PANTHER	OS01G0588500 PROTEIN-RELATED	39	362	-	-
	Bisa01g1734	412	Pfam	Protein tyrosine and serine/threonine kinase	82	357	IPR001245	GO:0004672\|GO:0006468
	Bisa01g1734	412	FunFam	Probable serine/threonine-protein kinase PBL8	164	378	-	-
	Bisa01g1734	412	ProSiteProfiles	Protein kinase domain profile.	78	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g1734	412	Gene3D	Phosphorylase Kinase; domain 1	54	163	-	-
	Bisa01g1734	412	ProSitePatterns	Protein kinases ATP-binding region signature.	84	116	IPR017441	GO:0005524
	Bisa01g1734	412	MobiDBLite	consensus disorder prediction	366	412	-	-
	Bisa01g1734	412	FunFam	Serine/threonine-protein kinase BIK1	45	163	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g1734	Bisa-ChrBisa01	29873399	29877142	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g1734	54	358	Glycoside Hydrolase	AT3G07070	53.571	2.67e-114	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Bisa01g1734		PK_Tyr_Ser-Thr	2.1e-47	CL0016